Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14412g00001 CTTCTCTTTGTTTTTGCCGGTGTCGGTTCAGCCATAGCCTATGCTAAGTTGACATCAGATGCAGCTCTTGATCCTGCTGGGTTGGTGGCTGTTGCCATTGGCCATGGTTTTGCTCTCTTCGTTGCTGTTTCAGTCGGAGCCAACATTTCTGGTGGCCATGTTAACCCTGCTGTGACCTTTGGGTTGGCTCTTGGAGGTCACATCACCATCCTCACTGGTCTCTTCTACTGGATTGCTCAGCTCCTTGGCTCCATAGTGGCCTGCTTTCTCCTCAAGTTTGTCACTGGCTATAGTATTCCTATCCACGGTGTTGCTGCGGGAGTTGGAGCCGGAGAAGGAGTTGTTACTGAGATCATCATCACATTTGGATTAGTGTACACAGTGTATGCTACAGCTGCAGACCCAAAGAAGGGTTCACTTGGTACAATTGCACCCATTGCCATAGGTTTCATCGTTGGTGCAAACATCTTAGCTGCAGCACCATTTTCTGGGGGATCCATGAACCCTGCACGTTCCTTTGGCCCTGCAGTTGTCAGCGGTGACTTTCATGACAACTGGATCTACTGGATTGGCCCTCTTGTTGGTGGTGGTTTGGCTGGTCTTATCTACACCTATGCCTTCATTCCCACCCAGCACCATGCGCCTCTCGCCACTGATTTTTGA 663 0.5023 LLFVFAGVGSAIAYAKLTSDAALDPAGLVAVAIGHGFALFVAVSVGANISGGHVNPAVTFGLALGGHITILTGLFYWIAQLLGSIVACFLLKFVTGYSIPIHGVAAGVGAGEGVVTEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAAPFSGGSMNPARSFGPAVVSGDFHDNWIYWIGPLVGGGLAGLIYTYAFIPTQHHAPLATDF 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14412g00001 220 FunFam Probable aquaporin TIP1-1 1 220 - -
Vium14412g00001 220 CDD MIP 1 205 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium14412g00001 220 ProSitePatterns MIP family signature. 53 61 IPR022357 -
Vium14412g00001 220 SUPERFAMILY Aquaporin-like 2 213 IPR023271 -
Vium14412g00001 220 Gene3D Glycerol uptake facilitator protein. 1 219 IPR023271 -
Vium14412g00001 220 Pfam Major intrinsic protein 1 203 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium14412g00001 220 PRINTS Major intrinsic protein family signature 186 206 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium14412g00001 220 PRINTS Major intrinsic protein family signature 72 91 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium14412g00001 220 PRINTS Major intrinsic protein family signature 149 171 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium14412g00001 220 PRINTS Major intrinsic protein family signature 116 134 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium14412g00001 220 PRINTS Major intrinsic protein family signature 35 59 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium14412g00001 220 PANTHER AQUAPORIN-8 1 213 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14412g00001 Vium-Chr14412 6 1335 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14412g00001 1 220 Major Intrinsic Protein MIP AT3G16240 78.378 4.52e-118 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14412g00001 K09873 - gmx:100817754 401.364