Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium143g00065 ATGCTTAGTCCTGAAGGAGAACTTAAAATAAGTTTTGGCTATAAATGCAACAGTGATAGAGGTATTCCCTGTGAGTTTGCCAGTGGCTGCAAAATCCTTCCCGGAGTGCGTAGAACAAGTAGTTTCTCTTGCTTGTCAGGTGCAGCCTTAAGTGCGAATGCTACATTAGCCAACACAAACATCTGCAATGGTAAAATAGGTGAAGAAATCCTTCCAAGTTGGGACTCTCCTAATTCATTTCGTAAGGTAACCTCTTCGCCAAGTCTTTCAAAGTTGGACATACTATCATCTTCCCTCCCAAGTAGTTTGTCTTACCTTAGCTGCAGTCCTTCTACTACAAGTGACATCCTCGAATATGACTCTTGCACGTTAAAATCAATGAGCGATCCTTCCAGAAGTGAAGGTTTTCTTAATGTTAAGGAAGTTCAAGTAGCAGGAGGAGCTGCCGGTGAAGACAGAGTTCAAGCAGTTTGTTCTGAAGAAAATGGGTGGCTCTTCTGTGCTATTTATGATGGCTTTAATGGAAGAGATGCAGCCGATTTTCTGGCTGGTACCCTGTATGACACCATCATATCATATTTTGATAAGTTAATCGAGGAATTGGAGCCAGGTTCCATCAGAGCTTATAATGATGGGGGCTTGGATGAATCCCTGCAATGTAAGTTGAATGACAGCCTTATTTATCACGAAGATCAATCTATGGCAAGGTTTAAAGGAATAAATGATTCTAATCATGGATGTTATGCAAAGTGTAGCCTATCTACTAAGTCAGAACTATCATGTGATCCATTTTCACAAGGGGTACTTGATATCCTTGAACGTGCTATTAGTCAGGCAGAGAATGATTTCCTGTACATGGTGGAGCGGGAAATGGAGGAACGTCCTGATCTAGTTTCTATTGGATCTTGTGTTTTACTAGTGCTTCTTCATGGTAATGATTTGTATACACTTAATCTGGGTGACAGCAGAGCAGTTTTGGCAACCTGCCTTACAGGTTGCCGAATGGATAAGAGTGAGAGACTGAAGGCTATACAGCTTACAGATAATCACACCGTTGAGAATGAAGTTGAAAGAGCTAGACTTCTGGCCGAACATCCCGATGATCCCAGGATCGTTATAGCAGGAAAAGTGAAAGGGAAACTCAAGGTTACTCGCGCTTTTGGAGTTGGCTACTTGAAAAAGAAAAATTTGAATGATGCTTTGATGGGAATCCTTCGAGTTCGTGATCTTAAAAGCCCACCATACATATCCACTCAACCATCACTGAATGTCCATAGAATCTCAAGCTCCGATCAATTTGTGATAGTTGGAAGTGATGGTTTATTTGACTTCTTCAGCAACGATGAGGCAGTGAAGCTTGTAGAGTCTTATATCTTGAGCACCCCTTTTGGCGATCCAGCAAAGTTTCTGATAGAGCAGCTTGTGGCTAGAGCAGCTGTTTCCGCCGGTTTAAGCATGGAAGAGTTGATGAACATTCCAGCTGGGAGGAGAAGGAAGTACCATGACGATGTGACCGTAATTGTGATCATGCTTGGGATGAATCAACGGACTTCAAAGGCATCAACTTGCATTTGA 1575 0.4222 MLSPEGELKISFGYKCNSDRGIPCEFASGCKILPGVRRTSSFSCLSGAALSANATLANTNICNGKIGEEILPSWDSPNSFRKVTSSPSLSKLDILSSSLPSSLSYLSCSPSTTSDILEYDSCTLKSMSDPSRSEGFLNVKEVQVAGGAAGEDRVQAVCSEENGWLFCAIYDGFNGRDAADFLAGTLYDTIISYFDKLIEELEPGSIRAYNDGGLDESLQCKLNDSLIYHEDQSMARFKGINDSNHGCYAKCSLSTKSELSCDPFSQGVLDILERAISQAENDFLYMVEREMEERPDLVSIGSCVLLVLLHGNDLYTLNLGDSRAVLATCLTGCRMDKSERLKAIQLTDNHTVENEVERARLLAEHPDDPRIVIAGKVKGKLKVTRAFGVGYLKKKNLNDALMGILRVRDLKSPPYISTQPSLNVHRISSSDQFVIVGSDGLFDFFSNDEAVKLVESYILSTPFGDPAKFLIEQLVARAAVSAGLSMEELMNIPAGRRRKYHDDVTVIVIMLGMNQRTSKASTCI 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium143g00065 524 PANTHER PROTEIN PHOSPHATASE 2C 142 509 IPR015655 GO:0004722|GO:0006470
Vium143g00065 524 SUPERFAMILY PP2C-like 150 512 IPR036457 -
Vium143g00065 524 ProSiteProfiles PPM-type phosphatase domain profile. 136 511 IPR001932 -
Vium143g00065 524 Pfam Protein phosphatase 2C 283 471 IPR001932 -
Vium143g00065 524 Gene3D - 105 520 IPR036457 -
Vium143g00065 524 CDD PP2Cc 149 509 IPR001932 -
Vium143g00065 524 SMART PP2C_4 127 509 IPR001932 -
Vium143g00065 524 FunFam Probable protein phosphatase 2C 40 117 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium143g00065 Vium-Chr143 516749 520352 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium143g00065 4 524 PP2C-type Phosphatase Gene Family AT3G16560 61.860 0.0 594
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium143g00065 - - vun:114178627 976.467