Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium143g00053 ATGAACACCATTCTCCGCCACCGCCTCAGGCTAAGTCCGACACCTATTCTCTATTGCTTCCCCAAATTCCTTTTTTCCCAACCCTTTCACTTTTTCTCAACAACCACTTCTGAGCCCTGCGCCTTCACCTTATCCTATCTCAGCAACACCTGCGGCTTCTCGCACGACGTCGCACTGAAACTATCTAAACGACTTCGTTTCGAAACCGCAGAAAAACCCGATTCCGTCTTCTCTTTCTTCCGAACCCACGGTTTCTCCACCTCCCAGATCTGCCGCATCTTCTACCAAGCCCCAGAGCTCTTGGTATGCGACCCCACCAAAAGGCTTCTCCCCAAATTCCAATTCTTTGCCTCTAAAGGCGCTTCGCCCTCCGACACCATTCTCATCGTCTCCAAGACCGCCCGTGTCCTTCGTTACGGTCTCAACAGCCATATCATTCCCATCTTTGAACTGATCCGAACGTTCTTGCCCTCCGACCTAAAAGCCCTCGCTGTTTTCATCGCCTGTCCCAATTTCATCGGAGACGGTCGTGTTGCCTCCAACGTTCAGTTGTTGCTCGACACCGGAGTAACGCACACCGGAATTCGCTACTTGCTCTGCTCTCGGCCTTCGGTTCTGTGCTCCGACCTGAGACCCGCTATTGAGGAAGTGAAGTTGTTGGGGTTTGAGCCTTTGAAGCTGAGCTTCACTCTGGCCATTCTGGCTAAAAGGGCTGTTTCGAAGCCTCTTTGGGATGCCAAAGTCGACGTCTTGAAGAAATGGGGTTGGTCCGAGGATGATATTTGTGTTGCTTTTAGGAACCAGCCTAATATTATGCTGCGTTCCAAGGAAAAACTTAATGCAGTGATGGGGTTTTGGGTTGGTAAGCTTGGTTGGGATCACTCCGTGCTTATTTCGTCCCCAACGTTGTTTTCGTACAGTTTGGAGAAAAGGGTTGCACCGAGGGCTTTGGTTGTGCAGTATCTTCTCTCCAAAGGATTGGTGAAGAAAAGTGCTAGCTTGGCCACACCTTTTGTTTTGTCTGATGAACGGTTTCTGCAAAAGTACGTGAAACGTTTCGAGGAGAAAACGCCCAGGTTACTAGAGTTATATCAAGCGGCACAGGGAACATGCTAG 1116 0.4991 MNTILRHRLRLSPTPILYCFPKFLFSQPFHFFSTTTSEPCAFTLSYLSNTCGFSHDVALKLSKRLRFETAEKPDSVFSFFRTHGFSTSQICRIFYQAPELLVCDPTKRLLPKFQFFASKGASPSDTILIVSKTARVLRYGLNSHIIPIFELIRTFLPSDLKALAVFIACPNFIGDGRVASNVQLLLDTGVTHTGIRYLLCSRPSVLCSDLRPAIEEVKLLGFEPLKLSFTLAILAKRAVSKPLWDAKVDVLKKWGWSEDDICVAFRNQPNIMLRSKEKLNAVMGFWVGKLGWDHSVLISSPTLFSYSLEKRVAPRALVVQYLLSKGLVKKSASLATPFVLSDERFLQKYVKRFEEKTPRLLELYQAAQGTC 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium143g00053 371 Pfam mTERF 78 214 IPR003690 GO:0003690|GO:0006355
Vium143g00053 371 Pfam mTERF 246 346 IPR003690 GO:0003690|GO:0006355
Vium143g00053 371 PANTHER CGI-12 PROTEIN-RELATED 42 352 IPR003690 GO:0003690|GO:0006355
Vium143g00053 371 Gene3D Transcription termination factor 3, mitochondrial 174 356 IPR038538 -
Vium143g00053 371 SMART mt_12 262 293 IPR003690 GO:0003690|GO:0006355
Vium143g00053 371 SMART mt_12 294 328 IPR003690 GO:0003690|GO:0006355
Vium143g00053 371 SMART mt_12 196 223 IPR003690 GO:0003690|GO:0006355
Vium143g00053 371 SMART mt_12 163 191 IPR003690 GO:0003690|GO:0006355
Vium143g00053 371 SMART mt_12 91 122 IPR003690 GO:0003690|GO:0006355
Vium143g00053 371 FunFam Mitochondrial transcription termination factor-like 141 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium143g00053 Vium-Chr143 424269 425766 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vium143g00053 mTERF 2.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium143g00053 K15031 - gmx:102666622 342.813