Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium143g00052 ATGTTCAAAATTTACCGCCGCACAACCCTTGGTTGTGCCAAGTTTTTCGAATTCACAACCCTAAAATGGAACCCTCTTTTCCAATTCTGCAGGGCCACCTCCACCTCCAATTCATCCTCTTTCGTGGTCTCGTACCTCGTCAACAACTGTGCCTTCTCCCAAAAAACCGCTCTCAAAGCTTCCCGCAATCTTCATTTCTCGAAACCCCAAAAGCCTGATTCTGTTCTCTCCTTCTTCCGAAACCACGCCTTCTCCAACTCTCATATATCTCATATCCTCCAAAGAGTGCCCCAGTTACTTTCATGCAACACCCAAAAGGTGCTGTTGCCAAAGTTTGAATTTTTGCGTTCAAAGGGTGCTTCATCCCTTGACATTATTCACGCCGTTACCGCCTGCCCTCATTTTCTCCGACGAAGCTTGGAGAATCGTATAATCCCAAGATATGAATTTATTAGAGGGCTCCTTCAACCCTTTATTACGGACAAACAAATCATTGATTTTCTGATTCACAATCCTGCTTTACTTTATGAAAGCCGTGGGGTAGCTAACCTCGAATTGTTGCTTGATAGTGGAGTTCCCGGTTCAAAAATTGTTAAATTGCCCCAGAGATGGCGTCGTCTACTCTACTTTGGCGACATGTCAAAGACAGTTCAGGAGTTGAAGCAAATGGGCTTCGATGCTTCGCTTTCAACATTCTGCATAGCGTTGGTTGCCAAAATTATCCTAAACGAAAGCAAATGGGCCGAGAAGATTGACACTTATAAGAGGTGGGGTTGGTCCGAAGAACAAGTTCTTCTAGCATTTAGGAGGCAGCCTTATTGTATGCTGTCATCCTGTGATAAAATTAATGCCGTGATGAGTTATTGGGTGGAGCAGGCAGGCTTCAATTCTGTGGACCTTGTCAAATCTCCTGGAATTTTCTTACTTAGTCTCCGAAAAAGGATTGCTCCGAGGGCTTGTGTCTTGCAGTTTCTTGTCTCAAAAGGTCTGCTACGGAAGGATGCAAGCTTAACGACACCATTTGTTCTGACTGAGAAGTTGTTCCTGGAAAACTATGTGAAACGTTTTAGGGAAGATTCTTCTCATCTGTTAAAGCTGTACACAGAACATGAGTCTTGGAAATGA 1125 0.4391 MFKIYRRTTLGCAKFFEFTTLKWNPLFQFCRATSTSNSSSFVVSYLVNNCAFSQKTALKASRNLHFSKPQKPDSVLSFFRNHAFSNSHISHILQRVPQLLSCNTQKVLLPKFEFLRSKGASSLDIIHAVTACPHFLRRSLENRIIPRYEFIRGLLQPFITDKQIIDFLIHNPALLYESRGVANLELLLDSGVPGSKIVKLPQRWRRLLYFGDMSKTVQELKQMGFDASLSTFCIALVAKIILNESKWAEKIDTYKRWGWSEEQVLLAFRRQPYCMLSSCDKINAVMSYWVEQAGFNSVDLVKSPGIFLLSLRKRIAPRACVLQFLVSKGLLRKDASLTTPFVLTEKLFLENYVKRFREDSSHLLKLYTEHESWK 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium143g00052 374 FunFam Mitochondrial transcription termination factor-like 140 360 - -
Vium143g00052 374 Gene3D Transcription termination factor 3, mitochondrial 154 365 IPR038538 -
Vium143g00052 374 SMART mt_12 198 226 IPR003690 GO:0003690|GO:0006355
Vium143g00052 374 SMART mt_12 90 121 IPR003690 GO:0003690|GO:0006355
Vium143g00052 374 SMART mt_12 297 331 IPR003690 GO:0003690|GO:0006355
Vium143g00052 374 SMART mt_12 126 157 IPR003690 GO:0003690|GO:0006355
Vium143g00052 374 SMART mt_12 265 296 IPR003690 GO:0003690|GO:0006355
Vium143g00052 374 Pfam mTERF 76 227 IPR003690 GO:0003690|GO:0006355
Vium143g00052 374 Pfam mTERF 184 348 IPR003690 GO:0003690|GO:0006355
Vium143g00052 374 PANTHER CGI-12 PROTEIN-RELATED 38 355 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium143g00052 Vium-Chr143 419284 421370 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vium143g00052 mTERF 4.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium143g00052 K15031 - gmx:102667698 468.003