Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium143g00039 ATGAAGTTCGCAACCCTAAGAATCCTTCACCATCGTCATTCTCTTCTCAATCTCAATCTCAATCCACCCTTCTCCGTCTGCTTCAATTTCAATTTCGCCACCGTTCCCCAATCTCACTCCTTCGTTGTCTCCTACCTCGTCTCCACCTGCGGCTTCTCCCCGGAATCCGCCGTCTCCGCCTCCCGCTACCTCCGTTTCAAGAGTTCTCAGAAGCCCGACTCCGTCCTAGCTTTTCTCTCCGAGCATGGCTTCTCCGTCTCTCAAATCCACGCCGTCGTCAAACGGGAAAGTCGCATCCTCCAGTGCAACCCCGACAAAGTCCTCCTCCCCAAGTTCCGGTTCCTCCGCTCCAAAGGCGCCTCCTCTGCCGACATAATCCACATGATCACCGCCGGACCCCGATTCCTCTTAGCCAACCTCAACAGCCACATTGTTCCCGCCTATCACTTGGTCAGAAGTTTCGTCGACTCTGACAAGCAAGTCATCACCTGTCTCAGGCGAAACACCTCCTTCATTGCCGACAGTCGCGTATCTCCCAACGTCCAACTTCTCCTCGACAATGGCGTCAAACGCTCCAGCATCGTTATGATGCTCTCCATGTGGCCCTCTATCCTCTGCTCCCATAACCTGTCCCACACTATTTGTGAATTGAAAGAAATGGGGTTTGACACTTCCAAAACCACCTTCGCCTTGGCCATGATGGCCAAAATGACTGTGAATAAAGCCAAGTGGGTTGACAAGGTTGAGGTTTGTAAGAAGTGGGGGTGGTCGGAGGAGCATGTGCTTGTGGCGTTTAAGAAGCATCCTCATTTCATGTTGAGCTCCCGTGAGAAGATTGATGCCGTATTTAGCTTCTGGGTTGAGGTGTCAGGGTATAGCTCTTTGGAGCTTGTCAAGTATCCTGTTATTATTCAGCTGAGTCTCCCTAAGAGGATTGTTCCCAGGTCTTTGGTTCTGAGATTTCTTGAAAAGGAAGGATTGAGGAAAAAGGGTGCAAGCTATGGCACGCCTCTACTCCCGACGGAGAATGCGTTTCTGAAGAAGTTTGTCTATGGTTTTGAAAAGCATTCTTCTAAGTTGTTGAAGATATATGAGAAAAGTATGAACGAAGGGAATAATAGAGAGGAGTAG 1131 0.4978 MKFATLRILHHRHSLLNLNLNPPFSVCFNFNFATVPQSHSFVVSYLVSTCGFSPESAVSASRYLRFKSSQKPDSVLAFLSEHGFSVSQIHAVVKRESRILQCNPDKVLLPKFRFLRSKGASSADIIHMITAGPRFLLANLNSHIVPAYHLVRSFVDSDKQVITCLRRNTSFIADSRVSPNVQLLLDNGVKRSSIVMMLSMWPSILCSHNLSHTICELKEMGFDTSKTTFALAMMAKMTVNKAKWVDKVEVCKKWGWSEEHVLVAFKKHPHFMLSSREKIDAVFSFWVEVSGYSSLELVKYPVIIQLSLPKRIVPRSLVLRFLEKEGLRKKGASYGTPLLPTENAFLKKFVYGFEKHSSKLLKIYEKSMNEGNNREE 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium143g00039 376 Gene3D Transcription termination factor 3, mitochondrial 140 357 IPR038538 -
Vium143g00039 376 PANTHER CGI-12 PROTEIN-RELATED 38 351 IPR003690 GO:0003690|GO:0006355
Vium143g00039 376 SMART mt_12 195 223 IPR003690 GO:0003690|GO:0006355
Vium143g00039 376 SMART mt_12 294 328 IPR003690 GO:0003690|GO:0006355
Vium143g00039 376 SMART mt_12 126 157 IPR003690 GO:0003690|GO:0006355
Vium143g00039 376 SMART mt_12 262 293 IPR003690 GO:0003690|GO:0006355
Vium143g00039 376 SMART mt_12 90 121 IPR003690 GO:0003690|GO:0006355
Vium143g00039 376 Pfam mTERF 174 328 IPR003690 GO:0003690|GO:0006355
Vium143g00039 376 Pfam mTERF 76 178 IPR003690 GO:0003690|GO:0006355
Vium143g00039 376 FunFam Mitochondrial transcription termination factor-like 140 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium143g00039 Vium-Chr143 311569 312979 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vium143g00039 mTERF 6.1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium143g00039 K15031 - gmx:102667698 351.288