Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium143g00038 ATGGAGCGGTACGGCCGGGCCAGCGAAGGGTCGCAGTCTGATCCGTCGCCGGAATGGACCGTGGCCGGCGCCGACGCCGGCATCGAAGAGTCCTCGTGGCAACACGGATTGGCAGCTGCCGAATCGTACCCTCTGCGACCCGATGAGGCTGATTGTATCTATTATCTGAGGACGGGATTTTGCGGTTACGGCACACGGTGTCGTTTCAACCATCCCCGTGACCGTGCTGCGGTCATTGGAGCTGCGGCGAGGACTGGAGGGGAGTTTCCGGAGCGCGTGGGGCAGCCTGTGTGCCAGTACTATATGAGGACGGGATCATGCAAGTTTGGTGCATCCTGCAAGTACCACCATCCTAGGCAGGCGGCAGGCAATGCTACCCCTGTGCCACTAAATTATTATGGATATCCGTTGCGAGTGGGTGAGAAAGAGTGTTCCTATTATGTGAAAACTGGACAGTGCAAATTTGGTGCAACTTGTAAATTCCACCATCCCCAACCTGCAGGTGTCCAAGTTATTGCACCATCACCGGTTCCCGCAGTTTCACATCTGCCTGTTCCGGTACCTTCACCGGTATATCCAACTGTACAGCCCCAATCTGGTCCTTCGCAACAACAATATGGTGTACTTGTTGCAAGGCCTCCTATGCTGCCTGGCTCAGTAGTTCAGGGTCCGTATGGGCCTATGGTGGTGTCTCCTGCCATGGTCCCTTTTTCAGGCTGGGGTCCTTATCAGGCTCCTGCAACAACCCCTGTAATGCCATCTAGCTCTGCGTCTAATGTTGGTTCAACACAGCTTTATGGGATAACCCCACTACCTTCGTCGGCAGCTACTTTTACTGGACCTTATCAGCCTTCTGGTCCCTCAGTTGGTCCTTCAGGTGCTATTCAGAAGGAGCATCCATTTCCAGAAAGACCTGATCAACCAGAATGTCATTATTACATGAAAACAGGGGAGTGCAAATTTGGTCCATCTTGCAGATATCATCATCCACCAGACAAGGGAGCACCTAAAGCAAATGTAATCCTTAGTCCTGTGGGTCTTCCTTTGCGTCCGGGGGCACCGCCTTGCACTCATTATACACAGCGTGGAGTTTGCAAATTTGGTTCTGCATGCAAATTTGATCATCCTATGGGATCACTTAGCTACAGTCCATCTGCCTCTTCCCTGGCTGACATGCCAGTTGCACCCTATCCTGTGGGTTCCTCAATCGGTACTCTTGCTCCGTCATCTTCATCCTCAGAGTTGCGGCCTGAACTTGGTGCAGGAGTCAGTAAGGAGTCTGTTTCGTCCAGAATGTCTTCAATGAGCACATCAACCGGATCAGTTGGTTTGACCTTGTCAAGCGTTGGACCCATTTCTCATTCAAGCACTCAACCATCTGCTCAGAGTTCCAGTTCTTCAGCAACTACCAGTGCTACCACAAGTAGCACTGTCTCTCACACCTCAAGCTAA 1452 0.52 MERYGRASEGSQSDPSPEWTVAGADAGIEESSWQHGLAAAESYPLRPDEADCIYYLRTGFCGYGTRCRFNHPRDRAAVIGAAARTGGEFPERVGQPVCQYYMRTGSCKFGASCKYHHPRQAAGNATPVPLNYYGYPLRVGEKECSYYVKTGQCKFGATCKFHHPQPAGVQVIAPSPVPAVSHLPVPVPSPVYPTVQPQSGPSQQQYGVLVARPPMLPGSVVQGPYGPMVVSPAMVPFSGWGPYQAPATTPVMPSSSASNVGSTQLYGITPLPSSAATFTGPYQPSGPSVGPSGAIQKEHPFPERPDQPECHYYMKTGECKFGPSCRYHHPPDKGAPKANVILSPVGLPLRPGAPPCTHYTQRGVCKFGSACKFDHPMGSLSYSPSASSLADMPVAPYPVGSSIGTLAPSSSSSELRPELGAGVSKESVSSRMSSMSTSTGSVGLTLSSVGPISHSSTQPSAQSSSSSATTSATTSSTVSHTSS 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium143g00038 483 ProSiteProfiles Zinc finger C3H1-type profile. 304 332 IPR000571 GO:0046872
Vium143g00038 483 SUPERFAMILY CCCH zinc finger 49 75 IPR036855 GO:0046872
Vium143g00038 483 PANTHER PROTEIN PHOSPHATASE RELATED 32 412 - -
Vium143g00038 483 ProSiteProfiles Zinc finger C3H1-type profile. 138 166 IPR000571 GO:0046872
Vium143g00038 483 MobiDBLite consensus disorder prediction 426 483 - -
Vium143g00038 483 SUPERFAMILY CCCH zinc finger 95 120 IPR036855 GO:0046872
Vium143g00038 483 SUPERFAMILY CCCH zinc finger 307 332 IPR036855 GO:0046872
Vium143g00038 483 MobiDBLite consensus disorder prediction 1 21 - -
Vium143g00038 483 SUPERFAMILY CCCH zinc finger 354 380 IPR036855 GO:0046872
Vium143g00038 483 ProSiteProfiles Zinc finger C3H1-type profile. 92 120 IPR000571 GO:0046872
Vium143g00038 483 MobiDBLite consensus disorder prediction 405 483 - -
Vium143g00038 483 FunFam CCCH type zinc finger protein 302 387 - -
Vium143g00038 483 SUPERFAMILY CCCH zinc finger 139 166 IPR036855 GO:0046872
Vium143g00038 483 Gene3D - 304 381 - -
Vium143g00038 483 ProSiteProfiles Zinc finger C3H1-type profile. 350 378 IPR000571 GO:0046872
Vium143g00038 483 MobiDBLite consensus disorder prediction 280 304 - -
Vium143g00038 483 Gene3D - 46 122 - -
Vium143g00038 483 Gene3D - 123 175 - -
Vium143g00038 483 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
Vium143g00038 483 SMART c3hfinal6 350 377 IPR000571 GO:0046872
Vium143g00038 483 SMART c3hfinal6 92 119 IPR000571 GO:0046872
Vium143g00038 483 SMART c3hfinal6 46 73 IPR000571 GO:0046872
Vium143g00038 483 SMART c3hfinal6 304 331 IPR000571 GO:0046872
Vium143g00038 483 SMART c3hfinal6 140 165 IPR000571 GO:0046872
Vium143g00038 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 165 IPR000571 GO:0046872
Vium143g00038 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 73 IPR000571 GO:0046872
Vium143g00038 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 353 377 IPR000571 GO:0046872
Vium143g00038 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 306 331 IPR000571 GO:0046872
Vium143g00038 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 95 119 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium143g00038 Vium-Chr143 292998 297951 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium143g00038 1 449 C2H2 Transcription Factor Family AT5G18550 56.616 8.74e-160 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vium143g00038 zf-CCCH 1.6e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium143g00038 - - gmx:100789405 787.719