Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium143g00037 ATGGATGTGAAAGAGGATTCCAAGGAGGAATGTCTCAGTGATTTGGTATCAAGGCGGTGTCCGAAGTGCTGTGGCATTTTATTTTGTTTTCTGGACCGGTTGAAGAATATACAAGGGGCACCGCCTTGCACTCATTATACACAGCGTGGAGTTTGCAAATTTGGTTCTGCATGCAAATTTGATCATCCTATGGGATCACTTAGCTACAGTCCATCTGCCTCTTCCCTGGCTGACATGCCAGTTGCACCCTATCCTGTGGGTTCCTCAATCGGTACTCTTGCTCCGTCATCTTCATCCTCAGAGTTGCGGCCTGAACTTGGTGCAGGAGTCAGTAAGGAGTCTGTTTCGTCCAGAATGTCTTCAATGAGCACATCAACCGGATCAGTTGGTTTGACCTTGTCAAGCGTTGGACCCATTTCTCATTCAAGCACTCAACCATCTGCTCAGAGTTCCAGTTCTTCAGCAACTACCAGTGCTACCACAAGTAGCACTGTCTCTCACACCTCAAGCTAA 513 0.4756 MDVKEDSKEECLSDLVSRRCPKCCGILFCFLDRLKNIQGAPPCTHYTQRGVCKFGSACKFDHPMGSLSYSPSASSLADMPVAPYPVGSSIGTLAPSSSSSELRPELGAGVSKESVSSRMSSMSTSTGSVGLTLSSVGPISHSSTQPSAQSSSSSATTSATTSSTVSHTSS 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium143g00037 170 MobiDBLite consensus disorder prediction 87 170 - -
Vium143g00037 170 ProSiteProfiles Zinc finger C3H1-type profile. 37 65 IPR000571 GO:0046872
Vium143g00037 170 MobiDBLite consensus disorder prediction 113 170 - -
Vium143g00037 170 SMART c3hfinal6 37 64 IPR000571 GO:0046872
Vium143g00037 170 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 40 64 IPR000571 GO:0046872
Vium143g00037 170 Gene3D - 33 102 - -
Vium143g00037 170 MobiDBLite consensus disorder prediction 90 104 - -
Vium143g00037 170 SUPERFAMILY CCCH zinc finger 41 67 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium143g00037 Vium-Chr143 287514 289703 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium143g00037 39 101 C2H2 Transcription Factor Family AT5G18550 66.154 1.20e-14 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vium143g00037 zf-CCCH 4.6e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium143g00037 - - vum:124824975 233.802