Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium143g00036 ATGTCAACCTCTAGAACCTCAGATACACCCTTCAAAGGATATGATCCCAACCAAACTCAAATGTGTCTCTCTCTTCTCCAACGCAACACATCTCCTTCTGGTGAGAGAAGAGGCAGAAGGAAGCAAGCTGAGCCAGGAAGGTTCCTCGGGGTCAGGAGGCGTCCTTGGGGTCGATATGCTGCTGAAATCAGAGACCCCACAACCAAAGAAAGGCATTGGCTTGGCACTTTCGACACTGCTCAGGAAGCAGCTCTTGCTTATGACAGAGCTGCTCTCTCCATGAAAGGAAACCAGGCAAGAACCAACTTTGTTTACTCCGACAACATCAACTTCCACACTATACTTTCTCCTGCCGATGTTCAAGTCCAACTTCAACTTCAACCTCTCCTCCCACCTTCACAGTTCCTCTCTAACACCACTCACACCAAACAGCCAAACAACCAGAATAGCCTCCCCAAGGTTGTCCACACTTCAAACACTGGAAACCCCTCCCCATTGAACAATGACGCCTTTGTTGAAATTGAAACCACGTATGGGTCTGCTGATCAGGATGATAGTTTCTTCTTTTCCAGTGATTCCAACTCAGGCTACCTTGAATGCATAGTTCCTGATAACTGTTTCAGACCTGCTTCCTCCAAAACAAACAGTTCAAACTCCAGAAAGAGCAATGTGAGCGATCAAAAGGCTAACACAAATTCCAGTGAGAGTACTAATCATCATGAACAGTACTACTACTCTCAAGAAATGGCAGGAATGGCCTCTAACTTTTCAGAGTTTTGTTATCCAAGTGAAGTCATGAGTCAAGGATCATGGGATGATCAACAGTCATGGGATTGGAACTGCAGTGAACTTTCAGCCATATTTAAGAACCCATTAAGGGTGGAAAATGGGTGCATGGATGCATTGTACCCGATGAGTGATGATCAGAGTCCAAGTCCAAGCTATGGAGTAATGAATGAGTGTGCTTCTTCTACTACCTGTTCTCCATCACTTCCACCCTTTGGGGACGTAGACTTGGGATACCCACTCTTCTGA 1035 0.458 MSTSRTSDTPFKGYDPNQTQMCLSLLQRNTSPSGERRGRRKQAEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAQEAALAYDRAALSMKGNQARTNFVYSDNINFHTILSPADVQVQLQLQPLLPPSQFLSNTTHTKQPNNQNSLPKVVHTSNTGNPSPLNNDAFVEIETTYGSADQDDSFFFSSDSNSGYLECIVPDNCFRPASSKTNSSNSRKSNVSDQKANTNSSESTNHHEQYYYSQEMAGMASNFSEFCYPSEVMSQGSWDDQQSWDWNCSELSAIFKNPLRVENGCMDALYPMSDDQSPSPSYGVMNECASSTTCSPSLPPFGDVDLGYPLF 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium143g00036 344 FunFam Ethylene-responsive transcription factor 2 47 105 - -
Vium143g00036 344 MobiDBLite consensus disorder prediction 135 169 - -
Vium143g00036 344 CDD AP2 47 103 IPR001471 GO:0003700|GO:0006355
Vium143g00036 344 Gene3D AP2/ERF domain 47 105 IPR036955 GO:0003700|GO:0006355
Vium143g00036 344 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
Vium143g00036 344 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Vium143g00036 344 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 35 238 - -
Vium143g00036 344 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
Vium143g00036 344 MobiDBLite consensus disorder prediction 28 48 - -
Vium143g00036 344 MobiDBLite consensus disorder prediction 33 48 - -
Vium143g00036 344 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
Vium143g00036 344 MobiDBLite consensus disorder prediction 211 239 - -
Vium143g00036 344 SUPERFAMILY DNA-binding domain 48 105 IPR016177 GO:0003677
Vium143g00036 344 Pfam AP2 domain 50 96 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium143g00036 Vium-Chr143 280691 282297 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium143g00036 1 259 AP2-EREBP Transcription Factor Family AT5G18560 43.564 1.99e-60 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium143g00036 AP2 1.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium143g00036 - - gmx:100812047 511.916