Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium143g00030 ATGCTGTCTCTCTTGTATCACCCAAATCTTGTGACACTGATTGGTTACTGTTGCGAACGTGACCAGCGGCTACTTGTTTACGAGTATATGCCGTTGGGGTCCTTGGAGAATCATTTATTCGATCGTCGTCTTGGCAGGGAACCACTTGACTGGAATACAAGGATGAAGATAGCAAGCGGTGTGGCAAAGGGATTGGAGTATTTGGAGATTTGGAGAGACCTTCCTGTGATGTTTGGAGAGCTCAGATCATCGAACATCCTCCTGGACGAGGGTTATCATCCCAAGTTGTCTTATTTTGGGATACCGAAATTTGGTCCCCTTGGTAATAGCAGTCATGTTTCAACAGGATCAGTGGGAAAATATGGTTACTGTGCCCCAGAATATGCAGTCACCGGCAACCTAACTCCGGAATGTAAGGTCTACGGTTTGGGAGTGGTCCTTCTGGAACTCATTTCGGGGCGTAAGGCCATTGATAAGAGTCGTTCCCCTGAAACGTGCCATCTTGTTAAGTGGGCACAACCTATTTTGAAGGACATTAGCGAGTATCATAGATTGGTGGATCCTCTACTTCACGGGTCTTATCAAGTGGAATGGCTTAATCAGGCGATTGTTATTGCAGCTATGTGTTTGCATGAAAAAGCTGATAGAAGGCCTACGATACGGGAAGTGGTGTCTGCTCTAACGTACATTGAATCACAGCAAAAACAGTGTAACAGAAGGGGTCGACATCTATGCTCTTTCTTCTACCCATCTCTTGTCAGAAAAGAAAGTGGATTGGAAAAAGAACGGAAGAAAGGGGAATTTGAGAGAGGCAGTACCGGTTATGGTGCAGATAGTGGAAAGCAAGTAGTTGGGTACATAGATATGCTAGAGATATGA 879 0.4516 MLSLLYHPNLVTLIGYCCERDQRLLVYEYMPLGSLENHLFDRRLGREPLDWNTRMKIASGVAKGLEYLEIWRDLPVMFGELRSSNILLDEGYHPKLSYFGIPKFGPLGNSSHVSTGSVGKYGYCAPEYAVTGNLTPECKVYGLGVVLLELISGRKAIDKSRSPETCHLVKWAQPILKDISEYHRLVDPLLHGSYQVEWLNQAIVIAAMCLHEKADRRPTIREVVSALTYIESQQKQCNRRGRHLCSFFYPSLVRKESGLEKERKKGEFERGSTGYGADSGKQVVGYIDMLEI 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium143g00030 292 Gene3D Phosphorylase Kinase; domain 1 1 30 - -
Vium143g00030 292 FunFam Serine/threonine-protein kinase PBS1 30 244 - -
Vium143g00030 292 Pfam Protein tyrosine and serine/threonine kinase 2 227 IPR001245 GO:0004672|GO:0006468
Vium143g00030 292 SUPERFAMILY Protein kinase-like (PK-like) 2 229 IPR011009 -
Vium143g00030 292 PANTHER OS07G0668900 PROTEIN 1 236 - -
Vium143g00030 292 Gene3D Transferase(Phosphotransferase) domain 1 31 247 - -
Vium143g00030 292 ProSiteProfiles Protein kinase domain profile. 1 230 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium143g00030 292 PIRSF ILK 1 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium143g00030 Vium-Chr143 215901 217322 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium143g00030 1 230 Glycoside Hydrolase AT3G07070 53.478 7.58e-84 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vium143g00030 PK_Tyr_Ser-Thr 3.7e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium143g00030 - - var:108330065 566.614