Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium143g00029 ATGCAAACGTTGAAGAAACAGAAGATTCAGGAGATATTGGATGCTCAAAACGCGACCATTGATGCTGATATGAATAATAGAGGAAAGGGCCGATTGAAGTATCTCCTCCAGCAAACTGAGCTGTTTGCCCATTTTGCCAAGGGTGATCAATCTTCTCAAAAGAAGACAAAAGGAAGGGGTCGCCATGCATCGAAGGTCACTGAAGAAGAGGAAGATGAAGAATACCTAAAAGGGGAGGAAGATGGTTTAGCAAACACACGGCTGGTGTCTCAACCTTCATGTATCCAAGGGAAGATGAGGGATTACCAACTTGCAGGGTTAAACTGGCTAATACGATTGTATGAGAATGGTATAAATGGAATTCTAGCAGATGAAATGGGGCTTGGAAAAACCTTGCAAACTATATCTTTGTTAGGCTACTTACACGAGTTTAGAGGTATAACAGGTCCTCATATGGTAGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAACGAAATTCGTCGCTTCTGCCCTGTTTTACGTGCTATAAAGTTTCTTGGCAACCCTGATGAAAGGAAGCACATAAGAGAAGAGTTACTTGTTGCTGGTAAGTTTGATGTGTGTGTTACAAGTTTTGAAATGGTAATCAAGGAGAAGTCTGCTTTACGGCGATTTAGTTGGCGCTACATTATTATTGATGAGGCACATCGAATCAAGAACGAAAATTCTCTCCTATCGAAAACAATGAGACTATACAACACGAACTATCGTCTTCTCATTACTGGCACACCATTACAGAATAATCTTCATGAACTCTGGGCTCTTCTCAACTTTCTTTTACCTGAAATATTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACGAACAAGAAGTTGTTCAACAACTGCACAAGGTGCTCCGTCCATTTCTCCTTCGAAGGTTGAAGTCAGATGTTGAGAAAGGTTTACCACCAAAAAAGGAAACAATTCTCAAGGTGGGCATGTCACAAATGCAGAAACAGTATTATAAGGCATTACTTCAGAAGGATCTGGAGGTGGTCAATGCTGGTGGAGAACGGAAACGTCTCCTAAATATAGCTATGCAACTACGAAAATGTTGTAATCACCCATATCTCTTTCAAGGCGCTGAACCTGGTCCACCCTTTACAACAGGAGACCATCTAATTACAAATGCTGGCAAGATGGTTCTTCTGGATAAGTTACTTCCAAAACTAAAAGAGCGTGATTCCAGGGTCCTTATATTTTCACAGATGACTAGGCTGCTAGACATACTTGAAGATTATCTTATGTTTTGTGGATACCAATATTGTCGCATAGATGGTAATACTGGTGGAGAGGATCGGGATGCTTCCATTGAGAATTTCAACAAACCAGGAAGTGAAAAGTTTGTCTTCCTGTTATCTACTCGGGCAGGAGGCCTTGGCATTAATCTTGCTACTGCTGATGTTGTCATTCTTTATGACAGCGACTGGAATCCTCAAGTTGATCTGCAAGCTCAGGATCGTGCTCATAGAATTGGCCAGAAAAAAGAAGTTCAAGTTTTTCGATTTTGCACTGAGTATACGATTGAGGAAAAAGTCATTGAAAGAGCTTACAAAAAGCTTGCACTTGATGCTCTGGTTATTCAGCAAGGCCGATTAGCTGAACAGAAGACTGTAAATAAAGACGAGTTGCTTCAAATGGTTAGATTTGGTGCTGAAATGGTTTTTAGTTCCAAGGACAGTACTATTACAGATGAAGATATCGACAGAATTATTGCTAAAGGAGAGGAAGCAACTGCTGAGCTTGATGCTAAGATGAAAAAATTTACGGAAGATGCTATCAAATTTAAGATGGATGACACTGCTGAGTTGTATGATTTTGATGATGAGAAGGATGAAAACAAATTTGATTTTAAAAAAATTGTGAGTGAAAACTGGGTTGAGCCGCCAAGAAGAGAACGGAAGCGCAATTATTCAGAGTCTGATTATTTCAAGCAAACAATGCGCCAAGGTGCTCCAACTAAACCTAAAGAGCCACGCATACCTAGGATGCCTCAATTGCATGATTTCCAGTTTTTCAACACACAAAGGCTGAGTGAGCTGTATGAAAAGGAAGTTCGTTACCTCATGCAAACACATCAGAAGAATCAGTTAAAAGACTCCATAGATGTTGATGAACCAGAAGAGGTTGGAGATCCATTAACTGCTGAAGAGTTAGAAGAGAAGGAGCAGTTGCTTGAAGAGGGATTTTCGTCATGGAGCCGGAAGGATTTTAATGCTTTCATTAGGGCCTGTGAGAAGTATGGTCGAAATGATATAAAAAGTATTGCTTCTGAGATGGAAGGAAAAACGCAGGAGGAGGTTGAAAGATATGCAAAAGTTTTCAGAGAAAGATACAGGGAATTAAATGATTATGATAGAATTATTAAAAACATTGAAAGAGGTGAAGCGAGAATAACCCGGAAAGATGAAATCATGAAAGCCATCGGGAAGAAGTTGGACCGCTATAAGAATCCTTGGCTAGAATTGAAGATACAATATGGACAAAACAAAGGGAAGTTATACAACGAAGAATGTGATCGATTCATGATATGCATGATTCACAAACTTGGCTATGGTAATTGGGATGAGTTGAAGGCAGCTTTTCGTATGTCTCCCTTATTTCGTTTTGATTGGTTTGTCAAGTCTCGCACAACACAAGAACTTACTAGGAGGTGTGACACTCTCATTCGGCTGGTGGAGAAGGAAAATCAAGAATATGATGAGAGGGAGAGGCAAGCTCGTAAAGAGAAGAAACTTGCGGCTAAGAGCATGACCCCGTCGAAGCGTTCCATGTCTAGACAGAACGATAGTCCCTCGGTGAAGAAGCGGAAGCAGTTAACCATGGATGACTATTTAAGCTCGGGAAAGAAGAAAAAATAA 2925 0.4024 MQTLKKQKIQEILDAQNATIDADMNNRGKGRLKYLLQQTELFAHFAKGDQSSQKKTKGRGRHASKVTEEEEDEEYLKGEEDGLANTRLVSQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAIKFLGNPDERKHIREELLVAGKFDVCVTSFEMVIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDEQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPFTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFCGYQYCRIDGNTGGEDRDASIENFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDEKDENKFDFKKIVSENWVEPPRRERKRNYSESDYFKQTMRQGAPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQLKDSIDVDEPEEVGDPLTAEELEEKEQLLEEGFSSWSRKDFNAFIRACEKYGRNDIKSIASEMEGKTQEEVERYAKVFRERYRELNDYDRIIKNIERGEARITRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMIHKLGYGNWDELKAAFRMSPLFRFDWFVKSRTTQELTRRCDTLIRLVEKENQEYDERERQARKEKKLAAKSMTPSKRSMSRQNDSPSVKKRKQLTMDDYLSSGKKKK 974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium143g00029 974 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 662 752 IPR036306 GO:0003677|GO:0006338|GO:0031491
Vium143g00029 974 Gene3D - 838 941 - -
Vium143g00029 974 Gene3D - 750 804 - -
Vium143g00029 974 CDD SANT 753 794 IPR001005 -
Vium143g00029 974 FunFam ISWI chromatin-remodeling complex ATPase CHR11 651 749 - -
Vium143g00029 974 Pfam Helicase conserved C-terminal domain 402 514 IPR001650 -
Vium143g00029 974 MobiDBLite consensus disorder prediction 50 71 - -
Vium143g00029 974 FunFam ISWI chromatin-remodeling complex ATPase CHR11 isoform A 750 804 - -
Vium143g00029 974 FunFam ISWI chromatin-remodeling complex ATPase CHR11 838 942 - -
Vium143g00029 974 ProSiteProfiles SANT domain profile. 749 801 IPR017884 -
Vium143g00029 974 CDD SF2_C_SNF 400 525 - -
Vium143g00029 974 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 6 954 - -
Vium143g00029 974 FunFam ISWI chromatin-remodeling complex ATPase CHR11 320 612 - -
Vium143g00029 974 SUPERFAMILY Homeodomain-like 753 803 IPR009057 -
Vium143g00029 974 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 84 314 IPR027417 -
Vium143g00029 974 Gene3D ISWI, HAND domain 651 749 IPR036306 GO:0003677|GO:0006338|GO:0031491
Vium143g00029 974 Pfam SLIDE 807 917 IPR015195 GO:0003677|GO:0005634|GO:0006338
Vium143g00029 974 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 404 555 IPR001650 -
Vium143g00029 974 Coils Coil 900 934 - -
Vium143g00029 974 Pfam HAND 663 746 IPR015194 GO:0003677|GO:0006338|GO:0031491
Vium143g00029 974 Pfam SNF2-related domain 112 379 IPR000330 GO:0005524|GO:0140658
Vium143g00029 974 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 316 597 IPR027417 -
Vium143g00029 974 Gene3D - 320 612 IPR027417 -
Vium143g00029 974 MobiDBLite consensus disorder prediction 47 77 - -
Vium143g00029 974 CDD DEXHc_SMARCA1_SMARCA5 96 316 IPR044754 GO:0005524
Vium143g00029 974 MobiDBLite consensus disorder prediction 950 974 - -
Vium143g00029 974 MobiDBLite consensus disorder prediction 921 974 - -
Vium143g00029 974 MobiDBLite consensus disorder prediction 921 938 - -
Vium143g00029 974 SMART helicmild6 430 514 IPR001650 -
Vium143g00029 974 SMART sant 852 913 IPR001005 -
Vium143g00029 974 SMART sant 750 799 IPR001005 -
Vium143g00029 974 FunFam Chromatin-remodeling complex ATPase 100 315 - -
Vium143g00029 974 SMART ultradead3 95 287 IPR014001 -
Vium143g00029 974 SUPERFAMILY Homeodomain-like 805 927 IPR009057 -
Vium143g00029 974 Gene3D iswi atpase 805 837 - -
Vium143g00029 974 Gene3D - 100 315 IPR038718 -
Vium143g00029 974 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 111 276 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium143g00029 Vium-Chr143 205665 214783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium143g00029 120 541 RAD5 or RAD16-like Gene Family AT1G02670 28.119 8.97e-44 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vium143g00029 SNF2_N 1.5e-72 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium143g00029 K11654 - gmx:100791510 1885.92