Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium143g00027 ATGGAAAGTTCTGTCAACGAACGTCTTGATTTTGGGAAGATGGAATACGGGTGCAAGCATTACAGGAGAAGATGCAGGATTCGTGCCCCCTGCTGCAACGAGATCCATTCATGCCGTCACTGTCACAACGAGGAAGCGAGTTTGTCGAAGAATTCATTTGATCGCCACGAACTCGTTCGCCAAGATGTTAAACAAGTTGTTTGTTCAGTTTGTGACACTGAGCAATCTGTCGCTCAAGTTTGCACTAACTGTGGCGTCAAAATGGGAGAATATTTCTGCAACATATGTAAATTCTTCGATGATGATACAGAGAAACAGCAGTTTCATTGTGATGATTGCGGGATCTGCAGGGTTGGTGGTCGGGAAAATTTTTTCCACTGCAAGAAGTGCGGGTCTTGTTATTCAATTGGTCTGCGTGATAATCATTTATGCGTGGAGAACTCAATGAGGCATCACTGCCCCATTTGTTATGAGTATCTATTTGATTCATTGAAAGACACGGTTGTTATGAAATGTGGTCATACAATGCACCAAGAATGTTACCACGAGATGGTAAATCGTGATAGGTATTGCTGTCCCATATGCTCCAAGTCGGTGGTGGACATGTCCAGGACGTGGAAGAGAATTGATGAAGAGATTGAAGCATCTATCATGCCTGAAGATTATCGATACAGGAAGGTCTGGATACTATGTAACGACTGCAATGACACAACAGAAGTTAACTTCCATATTCTTGGCCATAAATGCGGTCATTGCAATTCATATAATACTCGCTCAATTGCGCCTCCAGTTCTTCCTCAATGA 804 0.4291 MESSVNERLDFGKMEYGCKHYRRRCRIRAPCCNEIHSCRHCHNEEASLSKNSFDRHELVRQDVKQVVCSVCDTEQSVAQVCTNCGVKMGEYFCNICKFFDDDTEKQQFHCDDCGICRVGGRENFFHCKKCGSCYSIGLRDNHLCVENSMRHHCPICYEYLFDSLKDTVVMKCGHTMHQECYHEMVNRDRYCCPICSKSVVDMSRTWKRIDEEIEASIMPEDYRYRKVWILCNDCNDTTEVNFHILGHKCGHCNSYNTRSIAPPVLPQ 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium143g00027 267 SUPERFAMILY Zinc hairpin stack 89 146 IPR037275 -
Vium143g00027 267 SUPERFAMILY RING/U-box 152 202 - -
Vium143g00027 267 Pfam CHY zinc finger 18 98 IPR008913 GO:0008270
Vium143g00027 267 Pfam Ring finger domain 152 195 IPR001841 -
Vium143g00027 267 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 8 263 - -
Vium143g00027 267 Pfam Zinc-ribbon 200 258 IPR039512 -
Vium143g00027 267 ProSiteProfiles Zinc finger CHY-type profile. 11 86 IPR008913 GO:0008270
Vium143g00027 267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 226 IPR013083 -
Vium143g00027 267 FunFam RING finger and CHY zinc finger domain-containing protein 1 224 265 - -
Vium143g00027 267 Gene3D - 227 262 - -
Vium143g00027 267 SMART ring_2 153 195 IPR001841 -
Vium143g00027 267 SUPERFAMILY CHY zinc finger-like 14 87 IPR037274 GO:0008270
Vium143g00027 267 ProSiteProfiles Zinc finger RING-type profile. 153 196 IPR001841 -
Vium143g00027 267 ProSiteProfiles Zinc finger CTCHY-type profile. 88 152 IPR017921 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium143g00027 Vium-Chr143 197841 201779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium143g00027 2 266 C2H2 Transcription Factor Family AT3G18290 38.710 1.30e-55 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium143g00027 K10144 - gmx:100792038 545.814