Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium143g00025 ATGCAAGGTCACACTACGAAAAAGGAAACCGAAACTCACTCTACCATGCCACCATTCTCTCAAATCCCACCTTCTTCTTCTTCTTTTCTTCACCCTTCGACCATTGCCGAAGCAACTGCTAACACCACCAGCAGAAAGCGTGTTAAGAGACCGAGTCACTCCAATTGTGGGAGCGTTAACATGGAACGTGAAAGAAGGTCCAAGATGACTCAAATGTTCACTCAGCTTCAAACCTCTGTCCCTGGTCTCTTACCTCAGGCTACAAGAGAAGTGATAATAAACGAGACAATTGGGTACATAAAGGAGCTTGAGAAGAAGAAGCAGAGATTGGAGGAGTTGAAGAAGTTGAAGGAGACCATGAAAGGTGTGGAAGGATCAACGGTTGAATGTGGTAACAATAATAGAAATTCTTCACTCGTGGTTACTGTTTCTGATAATGTTGCATTCTTTGGTATTCAATGGATGCCTCGACCAGGTTTGGTGACACAAATTTTGAAGGTGTTTTGCAATCACCAAGCAGAGATTTTGGCTGCAAATGTGACTGTTAATAATGGGAAATTGATATTGGCAATCACAGCTTTGGTGCAAAACAATGGAAACTGTGTGGTTGAAAAGATTAAAAGAGAAATTATGGATTTGTAG 642 0.4159 MQGHTTKKETETHSTMPPFSQIPPSSSSFLHPSTIAEATANTTSRKRVKRPSHSNCGSVNMERERRSKMTQMFTQLQTSVPGLLPQATREVIINETIGYIKELEKKKQRLEELKKLKETMKGVEGSTVECGNNNRNSSLVVTVSDNVAFFGIQWMPRPGLVTQILKVFCNHQAEILAANVTVNNGKLILAITALVQNNGNCVVEKIKREIMDL 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium143g00025 213 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 33 197 IPR044278 GO:0003700|GO:0006355|GO:0009960
Vium143g00025 213 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 53 103 IPR011598 GO:0046983
Vium143g00025 213 SMART finulus 59 109 IPR011598 GO:0046983
Vium143g00025 213 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 60 115 IPR036638 GO:0046983
Vium143g00025 213 Coils Coil 93 123 - -
Vium143g00025 213 Gene3D - 39 131 IPR036638 GO:0046983
Vium143g00025 213 MobiDBLite consensus disorder prediction 12 42 - -
Vium143g00025 213 MobiDBLite consensus disorder prediction 1 62 - -
Vium143g00025 213 Pfam Helix-loop-helix DNA-binding domain 61 104 IPR011598 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium143g00025 31 117 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 36.735 3.59e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium143g00025 - - gmx:102670256 247.284