Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium143g00022 ATGGTTGAAGCAAAAACTTTTTACACAAACTACGCCATTAGACGTGGGTTTGGCGTGCGGACTAGAACTTCTAAAAAAGATAAAGACAACAACGTCTACTATCTCAGAATAGTTTGTTCAAGGGAGGGAAAATATGTGTCTTCGGTCAAACCAGTGGTAAAAACACTTCCAAGTCAAATTAACCAATGTCCTGCTGGGATAACCATTGCAAAGAAGGAGGACAAGTGGTTTATAAGGACCGTTGTTCTGGACCACAACCATGATCTTTGTCCAAATAACTCCAAACTATTTGCAGCCAATAGAAAGTTAAGCATGCATGCAAAACACACGTTGCAGGTCAACCACGATGCTGGAGTTAGGTTAAATAAGAGTTTCCTTAGCATTGTGAACGATGCGGGGGGATATGAAAACATGGACTTTGTAGATGTGTATAAAGAGACAGGGTTCCACGAAGATTTCTTTGATTATGTGGCATTCGACGAGGTGATCAAAGTGCTTAGGTTGGAGGTTTATGTGAAGTAA 522 0.4061 MVEAKTFYTNYAIRRGFGVRTRTSKKDKDNNVYYLRIVCSREGKYVSSVKPVVKTLPSQINQCPAGITIAKKEDKWFIRTVVLDHNHDLCPNNSKLFAANRKLSMHAKHTLQVNHDAGVRLNKSFLSIVNDAGGYENMDFVDVYKETGFHEDFFDYVAFDEVIKVLRLEVYVK 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium143g00022 173 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 3 137 - -
Vium143g00022 173 Pfam FAR1 DNA-binding domain 6 90 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium143g00022 Vium-Chr143 162022 162911 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vium143g00022 FAR1 1.2e-13 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium143g00022 - - vum:124824958 355.525