LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium143g00018	ATGGGGTGTGTGTTTGGGAAAGGAGCGTCGAAGAGGAGAGAGGAAGTGAAAGTTGAAAGCGCAGAAGAAGAGGGTGCTGTTCAGAACGGTGGGAATGTGAAGGAGGGCGGAGAAGAGGAAAAGAGCAAGCCCTCAAAGGGGGAGAGAAGGCGATCTTCGAAGCCGAATCCCAGGTTAAGCAATCCACCTAACCATGTACATGGTGAGCAAGTAGCTGCAGGGTGGCCCTCTTGGCTCACCAAGGTTGCTGGGGAAGCTATTAACGGGTTGATCCCTAGAAGAGCTGACACTTTTGAAAAGCTGAATAAGGTTGGACAAGGTACATATAGCAATGTTTACAAAGCGAAGGACACTTTGACAGGGAAAATTGTTGCCCTAAAGAAGGTCCGCTTTGACAATTTAGAGCCGGAGAGTGTGAAATTCATGGCCAGAGAGATCCTTATTCTGCGCCATCTGGATCATCCCAACGTTGTCAAACTGGAAGGTTTAGTGACTTCAAGGATGTCATGCAGTTTGTACCTTGTGTTTGAATACATGGATCATGATTTGGCTGGACTTGCTACAAGTCCAACAGTAAAGTTCACAGAGTCTCAGGTTAAATGCTATATGCATCAGCTACTTTCTGGACTGGAACACTGTCACAACCGTCATGTGCTGCATCGTGATATAAAGGGGTCAAACCTTCTAATTGACAATGAAGGAATTCTTAGGATTGCTGATTTTGGATTAGCTTCCTTCTTTGATCCTCATCAAAGGCACCCTATGACCAGCAGGGTGGTAACTTTATGGTATCGACCTCCAGAGCTTCTGCTTGGAGCCACAGATTACGATGTAGGAGTGGACCTCTGGAGTGCTGGCTGCATTCTTGCTGAATTGTTGGCTGGCAAGCCTATTATGCCTGGTCGAACCGAGGTGGAGCAGCTACATAAGATATTTAAGCTTTGTGGTTCTCCTTCTGATGAATATTGGAAAAAATCGAAGCTTCCACATGCTACCATTTTTAAGCCCCGACAATCATACAAGAGGTGCATAGAAGAGACATTTAAGAATTTCCCAGCATCATCCCTGCCACTGATTGAGACCCTTCTTGCAATTGATCCAGCTGAACGCCAAACTGCCACAGCTGCATTGCACAGTGAATTCTTTACTACAAAACCTTTTGCCTGTGAACCCTCTAGCCTTCCAAAATATCCTCCCAGCAAGGAGATGGATACAAAACTGCGAGATGAAGAAGCTAGAAGATTGAGAGCTGCTAACAAAACTAGTGCCGATGTAAAGAAATCACGTCCACGTCATAGAGGTGGAAGGGGAATTCCAATTCCAGATACCAATGCCGAGTTGCAAGCAAATATTGATAAATGGCGACTGGTGACACACGCAAATGCGAAGAGCAAGAGTGAAAAGTTTCCTCCTCCTCATGAAGATGGAAGTATAGGGTACCCTTTGGGTTCTTCACATCACATGGATCCAATTTTTGATCCTTCTGATGTTCCATTTAGTTCCACAAAGTTATCATATCCAAAATCAAATATCCAGACCTGGTCTGGTCCCTTGGTGGAAACTAGTGTGGATGCACCAAGAAGAAAGAAGAACATGCCAGGGAATGGCCGCACACATTCAAAGAATGGCTCTTATAGATAA	1641	0.4516	MGCVFGKGASKRREEVKVESAEEEGAVQNGGNVKEGGEEEKSKPSKGERRRSSKPNPRLSNPPNHVHGEQVAAGWPSWLTKVAGEAINGLIPRRADTFEKLNKVGQGTYSNVYKAKDTLTGKIVALKKVRFDNLEPESVKFMAREILILRHLDHPNVVKLEGLVTSRMSCSLYLVFEYMDHDLAGLATSPTVKFTESQVKCYMHQLLSGLEHCHNRHVLHRDIKGSNLLIDNEGILRIADFGLASFFDPHQRHPMTSRVVTLWYRPPELLLGATDYDVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSDEYWKKSKLPHATIFKPRQSYKRCIEETFKNFPASSLPLIETLLAIDPAERQTATAALHSEFFTTKPFACEPSSLPKYPPSKEMDTKLRDEEARRLRAANKTSADVKKSRPRHRGGRGIPIPDTNAELQANIDKWRLVTHANAKSKSEKFPPPHEDGSIGYPLGSSHHMDPIFDPSDVPFSSTKLSYPKSNIQTWSGPLVETSVDAPRRKKNMPGNGRTHSKNGSYR	546

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium143g00018	546	SMART	serkin_6	98	382	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium143g00018	546	FunFam	probable serine/threonine-protein kinase At1g54610	85	180	-	-
	Vium143g00018	546	MobiDBLite	consensus disorder prediction	34	55	-	-
	Vium143g00018	546	MobiDBLite	consensus disorder prediction	498	519	-	-
	Vium143g00018	546	MobiDBLite	consensus disorder prediction	8	22	-	-
	Vium143g00018	546	ProSitePatterns	Protein kinases ATP-binding region signature.	104	127	IPR017441	GO:0005524
	Vium143g00018	546	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	218	230	IPR008271	GO:0004672\|GO:0006468
	Vium143g00018	546	Gene3D	Phosphorylase Kinase; domain 1	87	180	-	-
	Vium143g00018	546	Pfam	Protein kinase domain	98	382	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium143g00018	546	MobiDBLite	consensus disorder prediction	418	443	-	-
	Vium143g00018	546	ProSiteProfiles	Protein kinase domain profile.	98	382	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium143g00018	546	FunFam	probable serine/threonine-protein kinase At1g54610	181	422	-	-
	Vium143g00018	546	MobiDBLite	consensus disorder prediction	463	546	-	-
	Vium143g00018	546	PANTHER	CELL DIVISION PROTEIN KINASE	96	386	-	-
	Vium143g00018	546	Gene3D	Transferase(Phosphotransferase) domain 1	181	422	-	-
	Vium143g00018	546	SUPERFAMILY	Protein kinase-like (PK-like)	93	387	IPR011009	-
	Vium143g00018	546	MobiDBLite	consensus disorder prediction	1	70	-	-
	Vium143g00018	546	CDD	STKc_CDK9_like	98	382	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium143g00018	Vium-Chr143	133584	137063	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium143g00018	93	420	Core Cell Cycle Gene Families	AT5G10270	51.744	1.11e-115	350

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Vium143g00018		Pkinase	4.8e-68	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium143g00018	K08819		-	gmx:100791757	963.755