Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium143g00013 ATGTGTGTGGTGCCTTCCATGGATGAAGGGTTGGAGCAGAGTTGGTGGGCCAACATGCCCCATGAGCTTCTCAGAGAGGTCCTCCTCCGAATTGAGTCGTCGGAGGCCAAGTGGCCACGGCGGAGAAGCGTGGTGGCTTGCGCCGGAGTCTGCCGTACCTGGAGGCTCATCATCAAGGAGATTGTCAAGCCACCTCAACTCTCTTCCAACATAACATTCCCCATCTCTCTCAAACAGCCTGGCCCAAGTGAACATCTACTTCAGTGCTTCATTAGGCGCGACAATGGCACACAGACATATTACCTGTTTCTCAGTTTATCTAGTGCACTAGCTGATGATGGGAAATTCCTTTTAGCCGCGCGAAAGTTCAGACGCCCAACCTGCACAGATTATATTATCTCCCTGGATGCGGATTACATGTCCAGGGAAAGCAATGCCTACATAGGGAAATTGAGATCAAATTTTTTGGGAACCAAGTTCACAGTCTACGATGTCCAACTGCCTCATTCAAGGGCAAATATGGCAAAAAGTTGCTCCACTAAGCTGGTGAATCAAAAACAAGTTTCACCCAAGGTCCCTACAGGCAACTACCCAGTTGCCCATATCTCATATGAATTGAATGTATTAGGCTCCAGGGGGCCAAGGAGAATGCATTGTGTCATAGATAGCATTCCTGCTTCTGCTATTGAACCAGAACGGGTAGCTCCTTCACAGACCAGTTATTCTGTTAGTAACTTAGGTACTTCATTCCCATTTTTTCAGACAAACTCAACTCATATGGAAAACTCCATATCTGGAGAGCAGAACAATAAAAGAGATGACGTTCTAGTGTTGAGAAATAAGGCTGCCAGGTGGCATGAGCAGATGCAGTGTTGGTGCTTAAACTTTCATGGGCGAGTGACAGTTGCTTCAGTTAAAAACTTTCAGCTGGCTGCTTTGCCAGTAAATGGACATGCTGAACCACAAGAGGATGATGTCATCCTCCAATTTGGAAAAGTTGGGAAGGACTTGTTTACAATGGATTACCGGTACCCTATCTCAGCATTTCAGGCATTTGCAATCTGCCTCAGCAGCTTTGCTACCACGGTTGCTTGCGAATGA 1101 0.4678 MCVVPSMDEGLEQSWWANMPHELLREVLLRIESSEAKWPRRRSVVACAGVCRTWRLIIKEIVKPPQLSSNITFPISLKQPGPSEHLLQCFIRRDNGTQTYYLFLSLSSALADDGKFLLAARKFRRPTCTDYIISLDADYMSRESNAYIGKLRSNFLGTKFTVYDVQLPHSRANMAKSCSTKLVNQKQVSPKVPTGNYPVAHISYELNVLGSRGPRRMHCVIDSIPASAIEPERVAPSQTSYSVSNLGTSFPFFQTNSTHMENSISGEQNNKRDDVLVLRNKAARWHEQMQCWCLNFHGRVTVASVKNFQLAALPVNGHAEPQEDDVILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFATTVACE 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium143g00013 366 SUPERFAMILY Tubby C-terminal domain-like 65 366 IPR025659 -
Vium143g00013 366 CDD F-box_AtTLP-like 16 60 - -
Vium143g00013 366 ProSitePatterns Tub family signature 1. 296 309 IPR018066 -
Vium143g00013 366 PRINTS Tubby superfamily signature 147 171 IPR000007 -
Vium143g00013 366 PRINTS Tubby superfamily signature 278 295 IPR000007 -
Vium143g00013 366 PRINTS Tubby superfamily signature 344 366 IPR000007 -
Vium143g00013 366 PRINTS Tubby superfamily signature 296 312 IPR000007 -
Vium143g00013 366 PRINTS Tubby superfamily signature 131 147 IPR000007 -
Vium143g00013 366 PRINTS Tubby superfamily signature 323 342 IPR000007 -
Vium143g00013 366 PRINTS Tubby superfamily signature 196 223 IPR000007 -
Vium143g00013 366 PANTHER TUBBY-RELATED 13 363 - -
Vium143g00013 366 Pfam Tub family 77 361 IPR000007 -
Vium143g00013 366 Gene3D Tubby Protein; Chain A 74 366 IPR025659 -
Vium143g00013 366 SUPERFAMILY F-box domain 9 60 IPR036047 GO:0005515
Vium143g00013 366 Pfam F-box domain 16 62 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium143g00013 Vium-Chr143 121660 124267 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium143g00013 9 366 TUB Transcription Factor Family AT2G47900 64.738 1.02e-171 483
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vium143g00013 Tub 1.2e-107 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium143g00013 K19600 - gmx:100794141 619.387