Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium143g00012 ATGTCTACCATGCCTGTTGGAGCAATGTTCCAGAAACTAACCACATTCATGACCTCTGATCATGCTTCTGTTGTCTCCATGAACATTTTTGTTGCCCTTCTGTGTGCTTGCATCATCATCGGTCACCTGTTGGAAGAGAACCGATGGATCAATGAATCCATCACTGCCCTTCTAATGGGTCTTTGTACTGGGGTCTTTATACTGCTTACCACTGGAGGAAAAAGCTCTCATATACTAGTCTTCAGTGAAGATCTTTTCTTCATTTACCTTCTCCCACCCATCATTTTCAATGCCGGGTTTCAAGTGAAGAAGAAACAATTTTTCCGCAACTTTATGACTATTATGCTCTTTGGTGCAGTTGGTACTTTGATATCATTCTGCATCATATCACTGGGTGCCATACATTTTTTTCAGAAGTTGGACATTGATTCCCTCAAGATTGGAGATTTTCTTGCAATTGGAGCAATATTTTCAGCAACAGATTCAGTTTGCACGTTGCAGGTTCTTAATCAGGATGAGACTCCTTTACTATATAGCCTGGTCTTTGGGGAAGGAGTAGTCAATGATGCTACCTCTGTAGTGCTCTTCAAAGCAATTCAAAATTTTGACCTCTCTCACATTGACTCAAATACTGCCTTACAGTTAATAGGAAATTTTTTATATCTATTCATTGCAAGCACTGTGTTGGGAATCTTTGCTGGATTGCTTAGTGCTTACATAATAAAAAAACTCTATTTTGACAAGCTAATAAGGCATTCTACAGACCGTGAGGTTGCTCTCATGGTACTCATGGCATACCTTTCATATATGCTGGCTGAACTATTTTCTTTGAGTGCCATTCTGACCGTTTTCTTCTGCGGAATTGTGATGTCTCACTACACGTGGCATAATGTAACTGAAAGTTCAAGGGTGACAACAAAGCATGTTTTTGCCACTTTGTCATTCATTGCTGAAATCTTCATCTTCCTCTATGTGGGGATGGACGCATTAGATATAGAGAAGTGGCGAATCGTAAGTGAAAGCCCAAGAAAATCTATTGGGGTCAGTTCGTTGCTGTTGGCACTTATTCTAGTGGGAAGAGCTGCATTTGTTTTCCCTCTGTCCTTCTTATCCAACTTGTTTAAGAAGTCTCAATCTGAGAAAATTGAGTTAAAGCAACAAGTAACAATTTGGTGGGCTGGTCTCATGCGTGGAGCAGTTTCTATCGCACTTGCTTACAATCAGTTTACTCGGTTGGGCCATACTAAATTGCGTGAGAATGCCATCATGATCACTAGTACCATCACTGTTGTACTCTTCAGCACATTGGCATTTGGGTTGATGACAAAGCCACTTGTAAGGCTATTGCTTCCTTCGTCAAAGCATGTGATGAGCTTTGCGTCCCCACCATCGACACCAAAATCATTCACAGTGCCACTTCTTGGCAGTGGAAGAGAGGATTCATCATGGACCAATGGTGGCACCCCAAATGGGCCTCCTCCAACCACCACCTTTAGAATGCTACTAAGCTCCATTCCTACTCGTGGGGTGCACCACTATTGGCGCAAGTTTGATGATTCTGTCATGCGACCCGTGTTTGGTGGACGAGGTTTTGTACCCTATGTTCCCGGGTCACCCCTTGAACAAAGTGTTCATCAGTGGCATGCCAGTTAG 1653 0.4247 MSTMPVGAMFQKLTTFMTSDHASVVSMNIFVALLCACIIIGHLLEENRWINESITALLMGLCTGVFILLTTGGKSSHILVFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFCIISLGAIHFFQKLDIDSLKIGDFLAIGAIFSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFKAIQNFDLSHIDSNTALQLIGNFLYLFIASTVLGIFAGLLSAYIIKKLYFDKLIRHSTDREVALMVLMAYLSYMLAELFSLSAILTVFFCGIVMSHYTWHNVTESSRVTTKHVFATLSFIAEIFIFLYVGMDALDIEKWRIVSESPRKSIGVSSLLLALILVGRAAFVFPLSFLSNLFKKSQSEKIELKQQVTIWWAGLMRGAVSIALAYNQFTRLGHTKLRENAIMITSTITVVLFSTLAFGLMTKPLVRLLLPSSKHVMSFASPPSTPKSFTVPLLGSGREDSSWTNGGTPNGPPPTTTFRMLLSSIPTRGVHHYWRKFDDSVMRPVFGGRGFVPYVPGSPLEQSVHQWHAS 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium143g00012 550 Gene3D - 146 198 - -
Vium143g00012 550 Pfam Sodium/hydrogen exchanger family 29 447 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Vium143g00012 550 PRINTS Na+/H+ exchanger signature 99 113 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vium143g00012 550 PRINTS Na+/H+ exchanger signature 154 164 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vium143g00012 550 PRINTS Na+/H+ exchanger signature 114 122 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vium143g00012 550 PRINTS Na+/H+ exchanger signature 85 96 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vium143g00012 550 PANTHER SODIUM/HYDROGEN EXCHANGER 19 526 IPR018422 GO:0006812|GO:0015385|GO:0016020|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium143g00012 Vium-Chr143 108728 112560 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium143g00012 9 546 Antiporters AT3G05030 73.211 0.0 802
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium143g00012 - - ccaj:109808409 988.023