Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium143g00007 ATGGACTGCAATAAAGAAGAGGCCTTAAGGGCCAAGAACATTGCTGAAAAGAAGATGGAAAACAGGGATTTTGCAGGGGCTCGTAAAATTGCTCTTAAGGCTCAGCAGCTGTACCCTGATCTGGAAAATATTGCTCAAATGCTTGTTGTCTGTGATGTGCACTGCTGTGCTGAGAATAAATTGTATGGTAATGAAATAGATTGGTATGAAATTCTTCAGGTTGAACAGACAGCTGTTGATGCACTAATTAAGAAGCAATATAGAAAGTTTGCCCTCCTACTCCATCCTGACAAAAACAAGTTTGCTGGTGCTGAAGCTGCATTTAAGCTGATTGGGGAAGCTCAAAGAGTACTTCTGGACAGAGAAAAACGTATTGTTTTTGACATGAAGCGTAGAGTTCCGAAGAACAAACCTGCTACATCACATTTTAATACTACTGCGGGGAGGAATGTTAGGTCTAACTTTACAAGCTCAACTTCTCAGCAGCAGCAGCAGCAGCAAAATGGTGCACGAGATACATTTTGGACAGTCTGCCCATTTTGTTCTGTTAAGTATCAATATTACAAAGAAATTTTAAAGAAATCTCTTCGCTGTCAACAATGTAACAGGCCCTTTGTTGCATATGAAGTGGAAAAACAAGGTACACCATCTCCTGCAACTAATTCAACTCAGCAAGCTTCTGACCAGCAGAAAGGTGGTTTGAATCATGGTGCTTTCAAGGTAGGTGCTGGATCTCAAAGCAATTCACATGCTGAGAAGTCCAATATGGGGTCATCTGATAAAAAGTTACCTGCTAGTGTTTCACGAAAACATAATGGAAAGAGAAAAAAGAAGCAGGTAGCAGAATCCAGTGAAAGTTCTGTTCCTTTGATCCACAGTGATTCTGAAGAAGATAGAGTTGCTGGAAAGGATGGTTATTCCAAAGTAGAAAACCATTCAACTACTAGAGAAGGGCATCTACGCAGATCTACCCGGAAAAGGCATCAGGTTTCCTACAAGGAGAATTTGAACAGCACTGATGATGGTGAGAAAAGTAAAATGAATGACCCTAATGATTTACCTGCTGCGCACAAAGAAGTAAATCAGAAAAAGCACCTGTATTCAGGAAGAAATGAGGAAACTAACACATTTAAGGGAAAAGATGTGGTGGGAGGGGCAAAGCAGTTGGATGAAACCTCAGAGCATTCTCCAAATTCAACCTTTAAAGTATCAAATCAACCAAATGTTTATGCCTTCCTTGATGCAGAGTTCAGTGATTTTGACAAGGACAAGAGAAAAGAATGTTTTGCTGCTGGGCAGATTTGGGCTGTTTATGACTCAGCAGAAGGTATGCCTAGATTCTATGCTTTAATCAGGAAAGTTCTATCTCCTGGATTCAAACTGCGGTTAACATGGTTCGAATCACATCCAGACTGGAAGGATGAAATGAACTGGGTGAACGAGGAATTGCCTGTTGCTTGTGGGAAATATAAACTTGGTGACACTGATGTCACGGAAGATCATCTGATGTTCTCTCATCTGGTTTTGTGTGAAAAAATTAGCCGCACTACTTTTAAAGTGTATCCTAGAAAGGGAGAAACTTGGGCCCTTTTTAAAAATTGGGATATTAAATGGTACATGGATGCGAAATCTCACCAGCTGTATGAATATGAGTTTGTTGAAATCTTGACAGATTATGTTGAAGATGAGGGTGTATATGTTGTCTACTTGACTAAGTTGAAAGGTTTTGTAAGTATCTTCCTTCAAAATATAAAGGAATCTAAAAAATCATTTCAAATTCCACCACGGGAGTTATTTAAATTCTCTCACAGGGTTCCATCTTTCAAAATGACTGGTGAGGAAAGGGCTGGTGTACCCTCAGGATCTTATGAACTTGATCCTGGAGCTTTGCCAGCACATTTTGAAGAGAAGGTTGGTGACGGCTCATCTGGCTGTGAGAATACAGGCACTTCAGATAGATCAGAATCCCTGATGTCTGAGGGAGGTAGGTCCACTCCCGAGGTTAATGGCAGCAATGATTGGTGTGCTTCTCTGGTACTAGAAACAATTGAAATTCCAGATACTCATTTCTTTAATTTTGATGCCGGGAGATCCCTTGAGAAGTTTCAGATTGGTCAAATTTGGGCATTTTACAGTGACGAGGATGGATTGCCAAAATATTACGGTCGCATTAACAAGATTGTGACTAGTCCTGATCTTGAATTGCATGTTTCCTGGCTTACTTGCTACTGGCTACCAGAGAACACCACTGAATGGGAGGACAAAGATATGGGTGTGCTTATTTCATGCGGTCGATATAACTTTAATAAAACAGATGAATTTTTCAGTATTTTTAATACAACCTCTTGTGTTTCACATCAAGTGCATGCTGAATCTGTTGGAAAGAATACAAATACAAAATATGCGATCTTTCCGAGGAAAGGTGAAGTTTGGGCGTTATATAGAAAATGGACAAATAAAATGAAGTGTTCTGAGTTGAAAAATTGGGAGTATGACATAGTGGAAGTTATCGAAGAAACTGATTTGTTCATTATTGTCTTAGTTCTGGAGTTTGTCAGTGGGTTTAATTCCGTTTTCAGAGGCAAGTTAAATGAAAGTTCATCTGGCAAGCTGAGAATTCCAAGAAAAGAGTTGCTTAGGTTCTCCCACCAAATCCCAGCTTTCAAACTGACAGAAGAGCATGGCAATCTCAGAGATTTCTGGGAACTTGATCCCGGTGCGCTACCAACACACTATTTTGGCTTGAGATGA 2751 0.4002 MDCNKEEALRAKNIAEKKMENRDFAGARKIALKAQQLYPDLENIAQMLVVCDVHCCAENKLYGNEIDWYEILQVEQTAVDALIKKQYRKFALLLHPDKNKFAGAEAAFKLIGEAQRVLLDREKRIVFDMKRRVPKNKPATSHFNTTAGRNVRSNFTSSTSQQQQQQQNGARDTFWTVCPFCSVKYQYYKEILKKSLRCQQCNRPFVAYEVEKQGTPSPATNSTQQASDQQKGGLNHGAFKVGAGSQSNSHAEKSNMGSSDKKLPASVSRKHNGKRKKKQVAESSESSVPLIHSDSEEDRVAGKDGYSKVENHSTTREGHLRRSTRKRHQVSYKENLNSTDDGEKSKMNDPNDLPAAHKEVNQKKHLYSGRNEETNTFKGKDVVGGAKQLDETSEHSPNSTFKVSNQPNVYAFLDAEFSDFDKDKRKECFAAGQIWAVYDSAEGMPRFYALIRKVLSPGFKLRLTWFESHPDWKDEMNWVNEELPVACGKYKLGDTDVTEDHLMFSHLVLCEKISRTTFKVYPRKGETWALFKNWDIKWYMDAKSHQLYEYEFVEILTDYVEDEGVYVVYLTKLKGFVSIFLQNIKESKKSFQIPPRELFKFSHRVPSFKMTGEERAGVPSGSYELDPGALPAHFEEKVGDGSSGCENTGTSDRSESLMSEGGRSTPEVNGSNDWCASLVLETIEIPDTHFFNFDAGRSLEKFQIGQIWAFYSDEDGLPKYYGRINKIVTSPDLELHVSWLTCYWLPENTTEWEDKDMGVLISCGRYNFNKTDEFFSIFNTTSCVSHQVHAESVGKNTNTKYAIFPRKGEVWALYRKWTNKMKCSELKNWEYDIVEVIEETDLFIIVLVLEFVSGFNSVFRGKLNESSSGKLRIPRKELLRFSHQIPAFKLTEEHGNLRDFWELDPGALPTHYFGLR 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium143g00007 916 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN-RELATED 1 909 - -
Vium143g00007 916 MobiDBLite consensus disorder prediction 212 355 - -
Vium143g00007 916 Gene3D DnaJ domain 64 173 IPR036869 -
Vium143g00007 916 PRINTS DnaJ domain signature 103 123 IPR001623 -
Vium143g00007 916 PRINTS DnaJ domain signature 69 87 IPR001623 -
Vium143g00007 916 PRINTS DnaJ domain signature 87 102 IPR001623 -
Vium143g00007 916 Pfam Domain of unknown function (DUF3444) 682 893 IPR024593 -
Vium143g00007 916 Pfam Domain of unknown function (DUF3444) 410 614 IPR024593 -
Vium143g00007 916 MobiDBLite consensus disorder prediction 136 168 - -
Vium143g00007 916 MobiDBLite consensus disorder prediction 291 318 - -
Vium143g00007 916 MobiDBLite consensus disorder prediction 241 262 - -
Vium143g00007 916 MobiDBLite consensus disorder prediction 138 168 - -
Vium143g00007 916 MobiDBLite consensus disorder prediction 636 668 - -
Vium143g00007 916 CDD DnaJ 67 120 IPR001623 -
Vium143g00007 916 MobiDBLite consensus disorder prediction 329 355 - -
Vium143g00007 916 MobiDBLite consensus disorder prediction 214 232 - -
Vium143g00007 916 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
Vium143g00007 916 MobiDBLite consensus disorder prediction 643 668 - -
Vium143g00007 916 Pfam DnaJ domain 67 128 IPR001623 -
Vium143g00007 916 SMART dnaj_3 66 123 IPR001623 -
Vium143g00007 916 SUPERFAMILY Chaperone J-domain 60 131 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium143g00007 Vium-Chr143 59309 63402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium143g00007 4 212 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 36.279 2.16e-30 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium143g00007 - - vun:114177826 1592.4