Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium143g00003 ATGGGCAGGTATCGAAGCCGGAGCAGAAGCTATAGTCCTCGGCGACGCAGCAGAACCCCGCCGCCACCTCCGTCACGTGGTCGCAAGCGCCATGTCGACGAACGCTACGGTGACAGCAGGTCATACAGGGACCGCCGCTCACCTCTTCCTTCTGGTTTACTCGTTCGCAATCTTCCCCTCGATGCCAGGCCTGAGGATCTTAGGATCCCTTTTGAGCGCTATGGTCCTGTGAAGGATGTTTATCTACCAAAAAATTACTACACTGGTGAACCACGGGGCTTTGGATTTGTGAAATATCGATATGGTGAAGATGCAGCTGAGGCAAAACAACATCTTAATCACACTATCATTGGTGGACGTGAAATAAGAATTGTTTTTGCTGAGGAAAACAGGAAAACTCCTCAAGAAATGCGTCTTAGTTCTCGAGGAAGAAGGAGAAATAGATCTAGATCCCCACAACGCCGACATCGATCCTATTCTCGGTCTCCATCACCTGCTAGGGATGATTCAAGGGATGACAGAGGTAGGGATGATTATTATTCTCCAGAGCGATCAAGATCTTATTCTAGGTCTCTCTCCCCTAGTGGTGGGAAGGACTACAGGAAGTCCCCTCGGGAGAACGGTCGGAGTCCTGGTGACAAGAAGGCTCAGACGCCTAGCAGATCCCAGAGCCCTAGGGGTAATGATCGCAGTCCTTCAAGGTCTCGTTCACGGTCATACAGTCCACGCTGA 732 0.5082 MGRYRSRSRSYSPRRRSRTPPPPPSRGRKRHVDERYGDSRSYRDRRSPLPSGLLVRNLPLDARPEDLRIPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRYGEDAAEAKQHLNHTIIGGREIRIVFAEENRKTPQEMRLSSRGRRRNRSRSPQRRHRSYSRSPSPARDDSRDDRGRDDYYSPERSRSYSRSLSPSGGKDYRKSPRENGRSPGDKKAQTPSRSQSPRGNDRSPSRSRSRSYSPR 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium143g00003 243 SMART rrm1_1 52 125 IPR000504 GO:0003723
Vium143g00003 243 MobiDBLite consensus disorder prediction 1 49 - -
Vium143g00003 243 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 53 123 IPR000504 GO:0003723
Vium143g00003 243 MobiDBLite consensus disorder prediction 161 184 - -
Vium143g00003 243 MobiDBLite consensus disorder prediction 26 45 - -
Vium143g00003 243 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 52 236 - -
Vium143g00003 243 MobiDBLite consensus disorder prediction 128 243 - -
Vium143g00003 243 MobiDBLite consensus disorder prediction 128 142 - -
Vium143g00003 243 MobiDBLite consensus disorder prediction 143 157 - -
Vium143g00003 243 Gene3D - 3 140 IPR012677 -
Vium143g00003 243 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 51 129 IPR000504 GO:0003723
Vium143g00003 243 MobiDBLite consensus disorder prediction 213 243 - -
Vium143g00003 243 SUPERFAMILY RNA-binding domain, RBD 37 142 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium143g00003 Vium-Chr143 23753 28296 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium143g00003 43 196 Eukaryotic Initiation Factors Gene Family AT1G22760 26.752 9.90e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium143g00003 K12900 - gmx:100788749 263.462