Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium143g00002 ATGGCGGCGGCGTCGCGACGGCTTCGGGACCTTCAATCACAGGCGGCGAACAAGATATGCGTTGACTACAGCCAGAAGAACCTGCAGTGGGCCTCTGCATCGTACGACGTCTTCATGTGTTTGGAGTGCTCCGGCAAGCACTGTGGCTTGGGCGTTCACATCTCCTTCGTCCGATCTGTCACCATGGACTCCTGGTCCGAAGTCCAGATCAATAAAATGGAAGCTAGCGGCAACGATAAGCTCAACGCCTTCCTCGCTCAGTGCTCCATCCCCAAGTGGACAGACATCGTTACTAAATACAACACCAACGCCTCCACTTTCACGCGAAGCTTGCAACAAATGGTCCAAGGAAACCGAATAACAACACGCCGGAACCGAATACAGCCTCAAATGTGA 396 0.5354 MAAASRRLRDLQSQAANKICVDYSQKNLQWASASYDVFMCLECSGKHCGLGVHISFVRSVTMDSWSEVQINKMEASGNDKLNAFLAQCSIPKWTDIVTKYNTNASTFTRSLQQMVQGNRITTRRNRIQPQM 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium143g00002 131 Gene3D Arf GTPase activating protein 1 128 IPR038508 -
Vium143g00002 131 CDD ArfGap_ArfGap1 4 117 - -
Vium143g00002 131 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 2 117 IPR044519 GO:0005096|GO:0016192
Vium143g00002 131 ProSiteProfiles ARF GTPase-activating proteins domain profile. 5 85 IPR001164 GO:0005096
Vium143g00002 131 PRINTS HIV Rev interacting protein signature 57 78 IPR001164 GO:0005096
Vium143g00002 131 PRINTS HIV Rev interacting protein signature 17 36 IPR001164 GO:0005096
Vium143g00002 131 PRINTS HIV Rev interacting protein signature 36 53 IPR001164 GO:0005096
Vium143g00002 131 SMART arf_gap_3 2 120 IPR001164 GO:0005096
Vium143g00002 131 Pfam Putative GTPase activating protein for Arf 6 96 IPR001164 GO:0005096
Vium143g00002 131 SUPERFAMILY ArfGap/RecO-like zinc finger 6 105 IPR037278 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium143g00002 Vium-Chr143 15166 15561 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium143g00002 2 91 C2H2 Transcription Factor Family AT4G05330 43.750 1.92e-20 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium143g00002 K12492 - vum:124824832 268.47