Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1439g00001 ATGGAACCTAACGGGATTGGCGAACTCAAGGTACCGTTGTTGCAGCCTCCGGAGGCTGCCGCTGCCGCCGTTAGGACAGTCATGTTTCAACTGAGCGACATCAAGTGTGCTTCGTGCGTAAATTCCGTCGAGGCCGTTGTTGGGGGCCTTAACGGCGTGAAAAGCGTCGCCGTTTCGCCGCTTGATGGCCGCGCTGCCATCAAGTTTGACCCCAAGTTGGTTACTGTGAAACAAATAAAAGAAGGCATAGAGGAGAGTGGGTTTGGAGTTGGTGAGCTTCATGAACAGGACATTGCAGTGTGCCGGGTGCAGATTAAAGGAATGGCATGCACAAGCTGCTCTGAGTCTGTTGAGAACGCCCTTCAAATGGTTGAAGGGGTGAAAAAAGCAATAGTTGGTCTTGCTTTGGAGGAGGCAAAAGTGCACTTTGATCCTAATCTAACAGATGTTGACAAGATAATTGAGACCATAGAGGATACAGGTTTTGGAGCTGATCTTATTAGCTCTGGGAATGATGCAAACAAAGTGTTTCTAAAGCTGGAAGGTGTTGATTCCGTAGAAGATGTAAATTTATTAATGTCTTCTCTTGAGTTAGCTGCGGGGGTGAACCATGTCGAGATGGATTTGTCAGAACATAAAGTTACAGTTAGCTATGATCCGGATGTTACAGGTCCAAGGTCTCTCATTCACCGTGTTCAGGAAGCTAGCTGTGGCCCCAAGAAGTATCAAGCAACCTTATACTCTCCTTCGACGCAAAGAGGAAGGGATAAGGTGAACGAAATCCGTATGTATAGGGACCAATTTTTGTTTAGCTGCTTATTTTCTGTTCCCGTGTTTGTATTTGCCATGGTGCTGCCCATGTTTCCTCCTTATGGAAACTGGTTAAACTACAGGATCCACAACATGCTTACTCTTGGGCTGTTTTTAAGATGGATTCTCTGCACGCCTGTCCAGTTCATAATTGGCAAAAGGTTCTATGTTGGATCATATCACGCACTGAAGCGAAAATCTGCTAACATGGATGTGCTTGTTGCACTTGGCACCAATGCTGCTTATTTTTACTCTCTATATATTTTAATAAAAGCACTGACTTCGGATACATTTGAAGGACAAGATTTCTTTGAGACAAGTTCTATGTTGATATCCTTTATTCTATTAGGGAAGTATTTGGAAATTGTGGCTAAAGGGAAAACATCGGATGCTTTAGGAAAGCTCACTCAGCTTGTTCCTGATAAAGCTTATTTAGTAGCAATTGATAATGATGGAAATATAACCACTGAGACAGAAATTGACACTCAACTTATACAAAAAAATGACATAATTAAGATTGTTCCTGGGGCCAAAATTCCTGTTGATGGAATTGTTATAAAAGGGCAAAGCTACGCAAATGAAAGTATGATCACTGGGGAGGCAAGACCTGTTGATAAAAGCCCAGGAGACAAGGTCATCAGTGGAACCATCAATGAAAATGGATGCTTGCTTGTTAAGGCCACACATGTTGGATCAGACACTGCACTTTCTCAAATAGTTCAACTCGTTGAAGCTGCTCAACTTGCCAAAGCACCAGTTCAAAAACTTGCTGACAATATTTCAAGGGTTTTTGTTCCAATAGTGGTTGTTGCGGCACTAATAACTTGGCTTGGATGGTTCATTCCTGGGAAAGCTGGTATTTTCCCTAAACATTGGATACCAACAGAAATGGATGCATTCGAGCTTGCTTTACAGTTTGCTATTTCTGTGTTGGTTGTTGCTTGCCCATGTGCTCTGGGACTTGCAACACCAACAGCAGTCATGGTTGCTTCAGGCATGGGTGCTTCTCAAGGTGTGCTCATAAAGGGTGGAAATGCACTGGAAAAGGCACACAAGGTAACTGTTATTGTGTTTGATAAGACTGGTACTTTAACAGTTGGGAAGCCAGAGGTAGTTAGCGCAGTTCTGTTTTCTGAGTTTTCTATGGAAGAGTTATGTGACATGACAATTGCTGTGGAGGCAAGCAGTGAGCACCCGATAGCAAAAGCTGTTGTGGTACACGCGAAGAGGCTGCGCAAGAAGTTTGGTTCTTCCACGGTGGAAATTTTGGATGTGGATGATTTTGAGGTACACATGGGAGCTGGTGTAAGTGGAAAAGTTGGTGACAGAACGGTTGTAGTTGGAAACAAGAGACTCATGCATGCTTGTAATATTCTAATAGGTTCTCAGGTTGAGAAGTACATCTCTGAAAATGAAAGTCTGGCTAGAACTTGCATTTTAGTTTCAATTGATGGAAAGATTGCTGGTGCATTCTGTGTAACTGATCCTGTAAAGCCAGAGGCTAGACGGGTTGTATCTTTCCTCCACTCCATGGGCATCTCAAGCATCATAGCGACTGGGGATAACCGTGCTACCGCAACTGCTATAGCAAATGAAGTAGGTATTGATGAGGTTTTTGCTGAGACAGATCCTGTTGGCAAAGCTAACAAGGTGAAAGACTTGCAGACGAAAGGAATGACTGTGGCAATGGTAGGTGATGGAATAAATGACTCACCAGCCCTGGTTGCTGCTGATGTTGGGATGGCAATTGGTGCTGGAACTGACATAGCCATAGAAGCAGCTGATATAGTTCTGGTCAAAAGCAGTTTGGAAGATGTGATCACAGCCATAGATTTATCCAGAAAGACCATGTCACGCATCCGACTGAACTACATTTGGGCTCTTGGTTACAACATTCTAGGCATGCCAATTGCTGCTGGAGTCTTGTACCCTTTTGCAGGAATCAGATTGCCCCCATGGCTTGCTGGTGCTTGCATGGCTGCTTCTTCTCTTAGTGTGGTTTCATCCTCTCTTCTGCTGCAGTTCTATAAAAAACCTCTGCATATAGAATCCCCTTGA 2868 0.4383 MEPNGIGELKVPLLQPPEAAAAAVRTVMFQLSDIKCASCVNSVEAVVGGLNGVKSVAVSPLDGRAAIKFDPKLVTVKQIKEGIEESGFGVGELHEQDIAVCRVQIKGMACTSCSESVENALQMVEGVKKAIVGLALEEAKVHFDPNLTDVDKIIETIEDTGFGADLISSGNDANKVFLKLEGVDSVEDVNLLMSSLELAAGVNHVEMDLSEHKVTVSYDPDVTGPRSLIHRVQEASCGPKKYQATLYSPSTQRGRDKVNEIRMYRDQFLFSCLFSVPVFVFAMVLPMFPPYGNWLNYRIHNMLTLGLFLRWILCTPVQFIIGKRFYVGSYHALKRKSANMDVLVALGTNAAYFYSLYILIKALTSDTFEGQDFFETSSMLISFILLGKYLEIVAKGKTSDALGKLTQLVPDKAYLVAIDNDGNITTETEIDTQLIQKNDIIKIVPGAKIPVDGIVIKGQSYANESMITGEARPVDKSPGDKVISGTINENGCLLVKATHVGSDTALSQIVQLVEAAQLAKAPVQKLADNISRVFVPIVVVAALITWLGWFIPGKAGIFPKHWIPTEMDAFELALQFAISVLVVACPCALGLATPTAVMVASGMGASQGVLIKGGNALEKAHKVTVIVFDKTGTLTVGKPEVVSAVLFSEFSMEELCDMTIAVEASSEHPIAKAVVVHAKRLRKKFGSSTVEILDVDDFEVHMGAGVSGKVGDRTVVVGNKRLMHACNILIGSQVEKYISENESLARTCILVSIDGKIAGAFCVTDPVKPEARRVVSFLHSMGISSIIATGDNRATATAIANEVGIDEVFAETDPVGKANKVKDLQTKGMTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLVKSSLEDVITAIDLSRKTMSRIRLNYIWALGYNILGMPIAAGVLYPFAGIRLPPWLAGACMAASSLSVVSSSLLLQFYKKPLHIESP 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1439g00001 955 Pfam E1-E2 ATPase 411 605 - -
Vium1439g00001 955 CDD HMA 103 164 IPR006121 GO:0046872
Vium1439g00001 955 ProSitePatterns E1-E2 ATPases phosphorylation site. 629 635 IPR018303 -
Vium1439g00001 955 Gene3D - 618 884 IPR023214 -
Vium1439g00001 955 SUPERFAMILY Calcium ATPase, transduction domain A 427 513 IPR008250 -
Vium1439g00001 955 NCBIfam heavy metal translocating P-type ATPase 340 943 IPR027256 GO:0006812|GO:0016020|GO:0019829
Vium1439g00001 955 CDD HMA 28 90 IPR006121 GO:0046872
Vium1439g00001 955 Gene3D - 395 517 - -
Vium1439g00001 955 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 21 950 - -
Vium1439g00001 955 ProSiteProfiles Heavy-metal-associated domain profile. 99 165 IPR006121 GO:0046872
Vium1439g00001 955 SUPERFAMILY HAD-like 625 940 IPR036412 -
Vium1439g00001 955 ProSitePatterns Heavy-metal-associated domain. 105 134 IPR017969 GO:0046872
Vium1439g00001 955 ProSitePatterns Heavy-metal-associated domain. 31 59 IPR017969 GO:0046872
Vium1439g00001 955 SFLD C1.7: P-type atpase like 609 886 - -
Vium1439g00001 955 NCBIfam copper ion binding protein 28 90 IPR006122 GO:0005507
Vium1439g00001 955 NCBIfam copper ion binding protein 103 163 IPR006122 GO:0005507
Vium1439g00001 955 SUPERFAMILY HMA, heavy metal-associated domain 96 170 IPR036163 GO:0046872
Vium1439g00001 955 Pfam Heavy-metal-associated domain 103 162 IPR006121 GO:0046872
Vium1439g00001 955 Pfam Heavy-metal-associated domain 29 88 IPR006121 GO:0046872
Vium1439g00001 955 ProSiteProfiles Heavy-metal-associated domain profile. 25 91 IPR006121 GO:0046872
Vium1439g00001 955 FunFam Copper-transporting ATPase HMA5 98 169 - -
Vium1439g00001 955 Gene3D - 638 767 IPR023299 GO:0000166
Vium1439g00001 955 Gene3D - 100 170 - -
Vium1439g00001 955 SFLD p-type atpase 609 886 IPR044492 -
Vium1439g00001 955 SUPERFAMILY HMA, heavy metal-associated domain 23 91 IPR036163 GO:0046872
Vium1439g00001 955 PRINTS P-type cation-transporting ATPase superfamily signature 463 477 - -
Vium1439g00001 955 PRINTS P-type cation-transporting ATPase superfamily signature 627 641 - -
Vium1439g00001 955 PRINTS P-type cation-transporting ATPase superfamily signature 857 869 - -
Vium1439g00001 955 PRINTS P-type cation-transporting ATPase superfamily signature 834 853 - -
Vium1439g00001 955 PRINTS P-type cation-transporting ATPase superfamily signature 759 770 - -
Vium1439g00001 955 PRINTS P-type cation-transporting ATPase superfamily signature 781 791 - -
Vium1439g00001 955 CDD P-type_ATPase_Cu-like 268 930 - -
Vium1439g00001 955 ProSiteProfiles Heavy-metal-associated domain profile. 174 240 IPR006121 GO:0046872
Vium1439g00001 955 FunFam Probable copper-transporting ATPase HMA5 747 891 - -
Vium1439g00001 955 Gene3D - 172 248 - -
Vium1439g00001 955 Pfam haloacid dehalogenase-like hydrolase 624 848 - -
Vium1439g00001 955 NCBIfam HAD-IC family P-type ATPase 380 911 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium1439g00001 955 SUPERFAMILY HMA, heavy metal-associated domain 170 239 IPR036163 GO:0046872
Vium1439g00001 955 SUPERFAMILY Calcium ATPase, transmembrane domain M 372 620 IPR023298 -
Vium1439g00001 955 PRINTS Copper-transporting ATPase 1 signature 123 144 - -
Vium1439g00001 955 PRINTS Copper-transporting ATPase 1 signature 26 51 - -
Vium1439g00001 955 PRINTS Copper-transporting ATPase 1 signature 52 75 - -
Vium1439g00001 955 Gene3D - 20 91 - -
Vium1439g00001 955 FunFam Copper-transporting ATPase 1, putative 395 517 - -
Vium1439g00001 955 FunFam ATPase copper transporting beta 22 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1439g00001 Vium-Chr1439 6395 13707 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1439g00001 24 953 Primary Pumps ATPases AT1G63440 56.303 0.0 1045
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1439g00001 K17686 - gmx:100793894 1670.98