Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14385g00001 ATGGCTTTCTTCTCCTCTTCTTCATGCTCTAATCAAACCCAGAAACAAACATCTTTCTTCATATGTATCATCTTCTTCACTTTGTTCCATAACACTGTAGAGTCAGTTTCCTTCAACTTTTCCAGCTTCCAGCAGTCAAACTTGAACAACCAAATAAATTTCACGGGTGATGCTTTTCCCTCAAACGGTGTTCTTCAGCTCACGAAGAACCAACTCGATGGCCCCATCACAAGTAGCGTTGGTCGAGCCTCGTATGAACAACCAGTGAGGATATGGGATAAAAAAACAAACAATCTCACCGATTTCAAAACCCATTTCTCTTTTATCATGAAAGCTGTGAACGAGTCATTTATTGGTGATGGCTTAGCCTTCTTCCTTGCACCCTTTGATTCTTCCATTCCCAACAATTCTTCTGGTGGGTTCCTTGGCCTGTTCAGCCCGGATTCCGCATTCGACACGAAGAAAAATCAGATGGTGGCAGTTGAGTTCGACAGTTTCAAGAATGAATGGGATCCGAGCTCAGACCACGTAGGGATCAATGTTAATTCCATTCAATCAGTTGCAAACGTCACTTGGAAGAGCAACATTAAGAACGGGTCTGTTGCTAATGCTTGGGTATGGTACAACTCCACATCCAAAACTCTATCTGTCTTCCTTACCTATGCTAAAAATCCAACCTTCAATAGCAGTTCCAGTCTTTCTTACGTTATTGATTTGAGGGACGTGTTGCCAGAGTTTGTTAGAATAGGCTTTTCTGCAGCAACGGGAAAATCGGTTGAGATACACAACATTTTGCTTTGGTCATTCAGTTCAACCTTGGATGAGGTTGGTGGGAAAAAGGTAAAGGTTGGCCTAGTGGTTGGTGTAAGTGTTGGTTTGGGTTGTTTAGCTTGTGCTGCAGGTCTAATATGGTTTACCTTTTGGAGAAGGAGAAATAGACTAAGGGGTGGAAACGAGGAGGAAATTGGTGTAGATGCCATAGATGATGAGTTTGAGAGAGGAACTGGTCCAAAGAGGTTCACCTACCGGGAACTAAGCAACGCAACGAACAACTTCGCTGAAGAAGGGAAGCTGGGACAAGGAGGGTTTGGAGGAGTTTACAAAGGTTTGATTGTGAATTCCAACCTTGAAGTGGCAGTGAAGAGGGTTTCGAAAGGGTCAAAGCAAGGGAAAAAGGAGTACATATCAGAAGTGACAGTCATCAGCCGTCTGAGACACAGAAACCTGGTTCAACTCATAGGGTGGTGCCATGAACAAGGTGAGCTCCTTCTTGTATATGAATTCATGCCAAACGGAAGCCTTGATTCTCATCTATTTGGAAAAAGAGTGATGCTTTCGTGGGTGGTGAGATACAAGGTGGCCATAGGTTTGGCATCTGCACTTCTTTATCTTCATGAAGAGTGGGAACAGTGTGTGGTCCATAGAGATATCAAGTCAAGCAACGTGATGTTGGATGGAAATTTCAATGCAAAGCTTGGTGACTTTGGTCTTGCAAGGCTGGTAGACCACGAACTGGGTTCACAAACGACTGTTTTGGCTGGAACCATGGGGTACCTAGCCCCAGAGTGTGTGACAACAGGGAAATCAAGCAAGGAATCTGATGTGTACAGCTTTGGTGTTGTGGCACTTGAGATCACATGTGGTAGAAAACCAGTGGAGGTGAAAGAAGAGGCTGGTAAAGTTAGGCTTGTGGAGTGGGTGTGGAACCTCTATGGAAAAGGGAAAGTACTAGAAGCAGCTGATGAGAAACTGAATCGGGAATTTGAAGAACAGCAAATGGAATGTTTGATGATTGTGGGGTTGTGGTGCTGTCACCCTGATCATACAATGAGGCCTTCCATTAGGCAAGTGATAAGTGTGCTTAACTTTGAAGCCCCTTTGCCAAGTCTTCCATCCAAGTTGCCAGTGCCAATGTACTTTGCACCTCCCATGGAGATTACTCAATTCTCCTACTCTTCATCTGCCGTCACAACCACAACCAAAGATTCCTCCCCGTACTCCTCAATTTCTAATGGCTCCCGAAAGTCTCCCTTGTAG 2037 0.4448 MAFFSSSSCSNQTQKQTSFFICIIFFTLFHNTVESVSFNFSSFQQSNLNNQINFTGDAFPSNGVLQLTKNQLDGPITSSVGRASYEQPVRIWDKKTNNLTDFKTHFSFIMKAVNESFIGDGLAFFLAPFDSSIPNNSSGGFLGLFSPDSAFDTKKNQMVAVEFDSFKNEWDPSSDHVGINVNSIQSVANVTWKSNIKNGSVANAWVWYNSTSKTLSVFLTYAKNPTFNSSSSLSYVIDLRDVLPEFVRIGFSAATGKSVEIHNILLWSFSSTLDEVGGKKVKVGLVVGVSVGLGCLACAAGLIWFTFWRRRNRLRGGNEEEIGVDAIDDEFERGTGPKRFTYRELSNATNNFAEEGKLGQGGFGGVYKGLIVNSNLEVAVKRVSKGSKQGKKEYISEVTVISRLRHRNLVQLIGWCHEQGELLLVYEFMPNGSLDSHLFGKRVMLSWVVRYKVAIGLASALLYLHEEWEQCVVHRDIKSSNVMLDGNFNAKLGDFGLARLVDHELGSQTTVLAGTMGYLAPECVTTGKSSKESDVYSFGVVALEITCGRKPVEVKEEAGKVRLVEWVWNLYGKGKVLEAADEKLNREFEEQQMECLMIVGLWCCHPDHTMRPSIRQVISVLNFEAPLPSLPSKLPVPMYFAPPMEITQFSYSSSAVTTTTKDSSPYSSISNGSRKSPL 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14385g00001 678 ProSitePatterns Legume lectins beta-chain signature. 159 165 IPR019825 -
Vium14385g00001 678 ProSitePatterns Legume lectins alpha-chain signature. 243 252 IPR000985 -
Vium14385g00001 678 SUPERFAMILY Concanavalin A-like lectins/glucanases 34 273 IPR013320 -
Vium14385g00001 678 CDD lectin_legume_LecRK_Arcelin_ConA 36 273 IPR001220 GO:0030246
Vium14385g00001 678 PANTHER - 51 628 - -
Vium14385g00001 678 SUPERFAMILY Protein kinase-like (PK-like) 336 653 IPR011009 -
Vium14385g00001 678 ProSitePatterns Protein kinases ATP-binding region signature. 358 381 IPR017441 GO:0005524
Vium14385g00001 678 ProSitePatterns Serine/Threonine protein kinases active-site signature. 472 484 IPR008271 GO:0004672|GO:0006468
Vium14385g00001 678 FunFam L-type lectin-domain containing receptor kinase IX.1 34 282 - -
Vium14385g00001 678 SMART serkin_6 352 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium14385g00001 678 CDD STKc_IRAK 366 622 - -
Vium14385g00001 678 Gene3D Phosphorylase Kinase; domain 1 337 428 - -
Vium14385g00001 678 Pfam Protein kinase domain 353 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium14385g00001 678 Gene3D Transferase(Phosphotransferase) domain 1 429 642 - -
Vium14385g00001 678 Pfam Legume lectin domain 36 274 IPR001220 GO:0030246
Vium14385g00001 678 Gene3D - 33 283 - -
Vium14385g00001 678 FunFam Lectin-domain containing receptor kinase A4.3 429 641 - -
Vium14385g00001 678 ProSiteProfiles Protein kinase domain profile. 352 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium14385g00001 678 MobiDBLite consensus disorder prediction 657 678 - -
Vium14385g00001 678 FunFam L-type lectin-domain containing receptor kinase IX.1 337 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14385g00001 Vium-Chr14385 77 2121 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14385g00001 21 639 Receptor kinase-like Gene Family AT5G10530 51.166 0.0 607
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vium14385g00001 Pkinase 1.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14385g00001 - - pvu:PHAVU_003G287100g 1178.7