Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14384g00001 TCTCTTGGGGAGGCATCCCCTATCATGAGTGCTTTTGCTGCGGGTCAAGCTGCTGCATACAAAATGTTTGAAACAATTGCGAGGAAGCCAGAGATAGATGCTTATGATCCAAATGGGAAAATATTAGAGGATATTGAAGGTGAAATAGAGTTGAGGGATGTTTGCTTCAGTTATCCAGCGAGGCCTGAGGAGTTGGTACTCAATAGGTTCTCTCTTGATATACCTAGTGGTACGAGTGCTGCAATGGTGGGACAAAGCGGGAGTGGAAAATCCACGGTTATCAGTTTGATAGAGAGATTCTATGATCCTCAAGAAGGTCAAGTTCTTATTGATGGCATTAACCTGAAAGAATTTCAGCTTAGGTGGATGAGGGGGAAAATTGGCCTTGTTAATCAGGAGCCAGTGTTGTTTGCATCAAGCATTAAGGATAACATTGCATATGGAAAGGAAGGAGCCACAACTGAAGAGATTAGATCAGCATCTGAACTTGCAAATGCTGCTAAATTCATTGATAAACTGCCACAGGGATTGAACACAATGGTTGGTGAACAAGGAACTCAACTCTCTGGTGGACAAAAACAGCGCATTGCCATAGCAAGAGCAATCCTAAAGGATCCAAGAATTCTTCTTCTGGACGAAGCTACAAGTGCCCTTGATGCAGAGTCCGAAAGAACAGTGCAAGAGGCTCTAGACAGGGTCATGGTTAATCGAACTACTGTTGTTGTGGCACATCGGTTGAGCACAGTGAGGAATGCTGATACGATTGTTGTAATTCATAGAGGGAAGGTGGTTGAAAAAGGAACACACTCAGAACTGGTGAAGGATCTCGAGGGAGCTTACTCTCAATTGATACGTTTACAAGAAGTAAACAAAGAATCAGAAGAAACTACAAGCTTTCACAGCAAGAGCGAACTTTCTACGGAATCCTCTACACTGTTAAACAAAAAGATATCAACTCGGAGATCTATCAGTAGGGGATCATCTTTGGGGAGTAGTAGCCGACACTCATTTTCGCTTTCTGGTTTACCCAAAGGTGTTAGTGTCCCTGATACTGAAAGTGTTAGTGTCCCTGATACTGAAAGTGATGACGCATTACTCGAAACACAAGCACAAGTGGTTTCACTACGCCGGCTTGCTTCCATCAACAAACCAGAGGTTCCAGTTCTTCTGATTGGATGTCTAGCTGCCATAGCAAATGGTGTTATACTTCCCATATTTGGGGTGTTGATTTCCACTGCGGTCAAAATATTTTATGAGCCAGTTGATGAGATGAAAAAGGACTCCAAATTTTGGGCACTTATGTTCGTGGTTCTTGGTCTTGCATCATTTTTGGTAATTCCAGCTCGAGCATACTTTTTTTCTGTGGCTGGATGCAAGTTAATCCAACGTATCAGGGTAATATGTTTTGAGAAAGTGGTGAACATGGAGGTTGGTTGGTTTGATGAGCCTAGCAACTCAAGTGGTGCTATAAGTGCAAGGCTCTCAGCAATTGCTACTTCTGTGCGCACCCTTGTTGGTGATGCACTGGGGCTGTTGGTCCAAAATTTAACATGTGCCTTGGCAGGTTTGATTATTGCTTTCATTGCATGCTGGCAATTGGCTTTGATTATTCTTGTCTTGATTCCCCTTATTGGCGCAAATGGCTATGTTCAAACGAAGTTCATGAAGGGGTTCAGCAAAGACGCAAAGATGATGTACGAGGAAGCAAGCCAAGTTGCCAAGGATGCAGTTGGAAATATAAGAACAGTAGCTTCTTTCTGTGCAGAAGATAAGGTAATGGAATTGTATAGGAAGAAATGTGAAGACCCCATGAAAACAGGGATATGGCAAGGGTTGATCAGCGGATTAGGATTTGGGGTTTCATTTTTCTTACTATTTTGTGTCTATGCAACTAGTTTCTATGCAGGAGCTAGACTAGTGGCCGCTGGAGAAACATCATTCTCCAATGTTTTTCGGGTTTTCTTTGCTTTAACTATGGCAGCTATTGGGGTTTCCCAGTTTAGCACAATTTCTCCTGATTCTGGCAAAGCCAAGTCAGTAACTGCGGCCATATTTGGAATAATTGATAAGAAGTCAGAGATAGATCCAAGTGACGAGACTGGTACCACATTGGATATAGTTGAGGGAGAAATTGAGCTTCATCAAGTGAGTTTCAACTACCCGTCAAGGCCAAAGATACAGATTTTTCGAGACCTTAACTTGGTTATCCATTCTGGCAAGACAGTGGCCCTTGTTGGTGAAAGTGGATGTGGAAAATCGACAGTGATTTCGTTGTTGCAGAGATTTTATATTCCAAATTCAGGTGAAATCAAACTTGACGGTGTACCAATTGAGGAGTTACAATTGAAGTGGTTTAGGCAGCAAATGGGTTTGGTAAGCCAAGAGCCAGTATTGTTCAATGACACTATTCGTGGTAACATTGCTTATGGGAAGGGAGGTGAAGCAAGTGAAGCAGAAATCATAACAGCCGCAGAACAAGCTAATGCCCATGTATTTATCAGTGCCTTACAACAGAGTTATAACACCGTAGTGGGAGAAAGGGGAACACAATTATCTGGTGGGCAGAAGCAAAGGGTAGCCATTGCCCGTGCTTTGATTAAAAGTCCAAAGATATTGCTATTAGACGAAGCCACAAGTGCATTAGACGCTGAGTCAGAGAGAGTTGTTCAGGATGCATTGGACAAAGTCATTGTGAATAGAACCACTGTGGTTGTGGCTCATCGCCTATCTGCAATAAAAAATGCAGATTTGATTGCTGTTGTTAAAGATGGAGTCATCGTGGAGAAGGGAAGCCATGAAACACTCGTTAAAGTCACCAACGGGTTTTACGCTTCCTTAGTCCAACTTCACTCAAATGGTTCAAAAACTAGAGTACCCTGA 2880 0.4267 SLGEASPIMSAFAAGQAAAYKMFETIARKPEIDAYDPNGKILEDIEGEIELRDVCFSYPARPEELVLNRFSLDIPSGTSAAMVGQSGSGKSTVISLIERFYDPQEGQVLIDGINLKEFQLRWMRGKIGLVNQEPVLFASSIKDNIAYGKEGATTEEIRSASELANAAKFIDKLPQGLNTMVGEQGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERTVQEALDRVMVNRTTVVVAHRLSTVRNADTIVVIHRGKVVEKGTHSELVKDLEGAYSQLIRLQEVNKESEETTSFHSKSELSTESSTLLNKKISTRRSISRGSSLGSSSRHSFSLSGLPKGVSVPDTESVSVPDTESDDALLETQAQVVSLRRLASINKPEVPVLLIGCLAAIANGVILPIFGVLISTAVKIFYEPVDEMKKDSKFWALMFVVLGLASFLVIPARAYFFSVAGCKLIQRIRVICFEKVVNMEVGWFDEPSNSSGAISARLSAIATSVRTLVGDALGLLVQNLTCALAGLIIAFIACWQLALIILVLIPLIGANGYVQTKFMKGFSKDAKMMYEEASQVAKDAVGNIRTVASFCAEDKVMELYRKKCEDPMKTGIWQGLISGLGFGVSFFLLFCVYATSFYAGARLVAAGETSFSNVFRVFFALTMAAIGVSQFSTISPDSGKAKSVTAAIFGIIDKKSEIDPSDETGTTLDIVEGEIELHQVSFNYPSRPKIQIFRDLNLVIHSGKTVALVGESGCGKSTVISLLQRFYIPNSGEIKLDGVPIEELQLKWFRQQMGLVSQEPVLFNDTIRGNIAYGKGGEASEAEIITAAEQANAHVFISALQQSYNTVVGERGTQLSGGQKQRVAIARALIKSPKILLLDEATSALDAESERVVQDALDKVIVNRTTVVVAHRLSAIKNADLIAVVKDGVIVEKGSHETLVKVTNGFYASLVQLHSNGSKTRVP 959
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vium14384g00001 959 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 390 676 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium14384g00001 959 FunFam ABC transporter B family member 1 369 677 - -
Vium14384g00001 959 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 49 285 IPR003439 GO:0005524
Vium14384g00001 959 Pfam ABC transporter 730 879 IPR003439 GO:0005524
Vium14384g00001 959 CDD ABC_6TM_Pgp_ABCB1_D2_like 379 694 - -
Vium14384g00001 959 CDD ABC_MTABC3_MDL1_MDL2 49 287 - -
Vium14384g00001 959 SMART AAA_5 738 932 IPR003593 GO:0016887
Vium14384g00001 959 SMART AAA_5 76 262 IPR003593 GO:0016887
Vium14384g00001 959 Gene3D ABC transporter type 1, transmembrane domain 1 304 IPR036640 GO:0005524|GO:0016020
Vium14384g00001 959 Pfam ABC transporter 67 216 IPR003439 GO:0005524
Vium14384g00001 959 MobiDBLite consensus disorder prediction 323 362 - -
Vium14384g00001 959 CDD ABC_MTABC3_MDL1_MDL2 711 949 - -
Vium14384g00001 959 SUPERFAMILY ABC transporter transmembrane region 376 696 IPR036640 GO:0005524|GO:0016020
Vium14384g00001 959 FunFam ABC transporter B family member 1 39 288 - -
Vium14384g00001 959 Gene3D ABC transporter type 1, transmembrane domain 369 678 IPR036640 GO:0005524|GO:0016020
Vium14384g00001 959 PANTHER ABC TRANSPORTER B FAMILY 367 949 IPR039421 -
Vium14384g00001 959 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 38 287 IPR027417 -
Vium14384g00001 959 ProSitePatterns ABC transporters family signature. 851 865 IPR017871 GO:0005524|GO:0016887
Vium14384g00001 959 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 711 948 IPR003439 GO:0005524
Vium14384g00001 959 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 702 949 IPR027417 -
Vium14384g00001 959 Gene3D - 39 288 IPR027417 -
Vium14384g00001 959 Gene3D - 701 951 IPR027417 -
Vium14384g00001 959 ProSitePatterns ABC transporters family signature. 188 202 IPR017871 GO:0005524|GO:0016887
Vium14384g00001 959 Gene3D ABC transporter type 1, transmembrane domain 679 953 IPR036640 GO:0005524|GO:0016020
Vium14384g00001 959 MobiDBLite consensus disorder prediction 323 340 - -
Vium14384g00001 959 Pfam ABC transporter transmembrane region 389 661 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium14384g00001 959 FunFam ABC transporter B family member 1 701 951 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vium14384g00001 Vium-Chr14384 2558 7428 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14384g00001 1 958 Calmodulin-binding Proteins AT2G36910 45.988 0.0 815