Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium14384g00001 | TCTCTTGGGGAGGCATCCCCTATCATGAGTGCTTTTGCTGCGGGTCAAGCTGCTGCATACAAAATGTTTGAAACAATTGCGAGGAAGCCAGAGATAGATGCTTATGATCCAAATGGGAAAATATTAGAGGATATTGAAGGTGAAATAGAGTTGAGGGATGTTTGCTTCAGTTATCCAGCGAGGCCTGAGGAGTTGGTACTCAATAGGTTCTCTCTTGATATACCTAGTGGTACGAGTGCTGCAATGGTGGGACAAAGCGGGAGTGGAAAATCCACGGTTATCAGTTTGATAGAGAGATTCTATGATCCTCAAGAAGGTCAAGTTCTTATTGATGGCATTAACCTGAAAGAATTTCAGCTTAGGTGGATGAGGGGGAAAATTGGCCTTGTTAATCAGGAGCCAGTGTTGTTTGCATCAAGCATTAAGGATAACATTGCATATGGAAAGGAAGGAGCCACAACTGAAGAGATTAGATCAGCATCTGAACTTGCAAATGCTGCTAAATTCATTGATAAACTGCCACAGGGATTGAACACAATGGTTGGTGAACAAGGAACTCAACTCTCTGGTGGACAAAAACAGCGCATTGCCATAGCAAGAGCAATCCTAAAGGATCCAAGAATTCTTCTTCTGGACGAAGCTACAAGTGCCCTTGATGCAGAGTCCGAAAGAACAGTGCAAGAGGCTCTAGACAGGGTCATGGTTAATCGAACTACTGTTGTTGTGGCACATCGGTTGAGCACAGTGAGGAATGCTGATACGATTGTTGTAATTCATAGAGGGAAGGTGGTTGAAAAAGGAACACACTCAGAACTGGTGAAGGATCTCGAGGGAGCTTACTCTCAATTGATACGTTTACAAGAAGTAAACAAAGAATCAGAAGAAACTACAAGCTTTCACAGCAAGAGCGAACTTTCTACGGAATCCTCTACACTGTTAAACAAAAAGATATCAACTCGGAGATCTATCAGTAGGGGATCATCTTTGGGGAGTAGTAGCCGACACTCATTTTCGCTTTCTGGTTTACCCAAAGGTGTTAGTGTCCCTGATACTGAAAGTGTTAGTGTCCCTGATACTGAAAGTGATGACGCATTACTCGAAACACAAGCACAAGTGGTTTCACTACGCCGGCTTGCTTCCATCAACAAACCAGAGGTTCCAGTTCTTCTGATTGGATGTCTAGCTGCCATAGCAAATGGTGTTATACTTCCCATATTTGGGGTGTTGATTTCCACTGCGGTCAAAATATTTTATGAGCCAGTTGATGAGATGAAAAAGGACTCCAAATTTTGGGCACTTATGTTCGTGGTTCTTGGTCTTGCATCATTTTTGGTAATTCCAGCTCGAGCATACTTTTTTTCTGTGGCTGGATGCAAGTTAATCCAACGTATCAGGGTAATATGTTTTGAGAAAGTGGTGAACATGGAGGTTGGTTGGTTTGATGAGCCTAGCAACTCAAGTGGTGCTATAAGTGCAAGGCTCTCAGCAATTGCTACTTCTGTGCGCACCCTTGTTGGTGATGCACTGGGGCTGTTGGTCCAAAATTTAACATGTGCCTTGGCAGGTTTGATTATTGCTTTCATTGCATGCTGGCAATTGGCTTTGATTATTCTTGTCTTGATTCCCCTTATTGGCGCAAATGGCTATGTTCAAACGAAGTTCATGAAGGGGTTCAGCAAAGACGCAAAGATGATGTACGAGGAAGCAAGCCAAGTTGCCAAGGATGCAGTTGGAAATATAAGAACAGTAGCTTCTTTCTGTGCAGAAGATAAGGTAATGGAATTGTATAGGAAGAAATGTGAAGACCCCATGAAAACAGGGATATGGCAAGGGTTGATCAGCGGATTAGGATTTGGGGTTTCATTTTTCTTACTATTTTGTGTCTATGCAACTAGTTTCTATGCAGGAGCTAGACTAGTGGCCGCTGGAGAAACATCATTCTCCAATGTTTTTCGGGTTTTCTTTGCTTTAACTATGGCAGCTATTGGGGTTTCCCAGTTTAGCACAATTTCTCCTGATTCTGGCAAAGCCAAGTCAGTAACTGCGGCCATATTTGGAATAATTGATAAGAAGTCAGAGATAGATCCAAGTGACGAGACTGGTACCACATTGGATATAGTTGAGGGAGAAATTGAGCTTCATCAAGTGAGTTTCAACTACCCGTCAAGGCCAAAGATACAGATTTTTCGAGACCTTAACTTGGTTATCCATTCTGGCAAGACAGTGGCCCTTGTTGGTGAAAGTGGATGTGGAAAATCGACAGTGATTTCGTTGTTGCAGAGATTTTATATTCCAAATTCAGGTGAAATCAAACTTGACGGTGTACCAATTGAGGAGTTACAATTGAAGTGGTTTAGGCAGCAAATGGGTTTGGTAAGCCAAGAGCCAGTATTGTTCAATGACACTATTCGTGGTAACATTGCTTATGGGAAGGGAGGTGAAGCAAGTGAAGCAGAAATCATAACAGCCGCAGAACAAGCTAATGCCCATGTATTTATCAGTGCCTTACAACAGAGTTATAACACCGTAGTGGGAGAAAGGGGAACACAATTATCTGGTGGGCAGAAGCAAAGGGTAGCCATTGCCCGTGCTTTGATTAAAAGTCCAAAGATATTGCTATTAGACGAAGCCACAAGTGCATTAGACGCTGAGTCAGAGAGAGTTGTTCAGGATGCATTGGACAAAGTCATTGTGAATAGAACCACTGTGGTTGTGGCTCATCGCCTATCTGCAATAAAAAATGCAGATTTGATTGCTGTTGTTAAAGATGGAGTCATCGTGGAGAAGGGAAGCCATGAAACACTCGTTAAAGTCACCAACGGGTTTTACGCTTCCTTAGTCCAACTTCACTCAAATGGTTCAAAAACTAGAGTACCCTGA | 2880 | 0.4267 | SLGEASPIMSAFAAGQAAAYKMFETIARKPEIDAYDPNGKILEDIEGEIELRDVCFSYPARPEELVLNRFSLDIPSGTSAAMVGQSGSGKSTVISLIERFYDPQEGQVLIDGINLKEFQLRWMRGKIGLVNQEPVLFASSIKDNIAYGKEGATTEEIRSASELANAAKFIDKLPQGLNTMVGEQGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERTVQEALDRVMVNRTTVVVAHRLSTVRNADTIVVIHRGKVVEKGTHSELVKDLEGAYSQLIRLQEVNKESEETTSFHSKSELSTESSTLLNKKISTRRSISRGSSLGSSSRHSFSLSGLPKGVSVPDTESVSVPDTESDDALLETQAQVVSLRRLASINKPEVPVLLIGCLAAIANGVILPIFGVLISTAVKIFYEPVDEMKKDSKFWALMFVVLGLASFLVIPARAYFFSVAGCKLIQRIRVICFEKVVNMEVGWFDEPSNSSGAISARLSAIATSVRTLVGDALGLLVQNLTCALAGLIIAFIACWQLALIILVLIPLIGANGYVQTKFMKGFSKDAKMMYEEASQVAKDAVGNIRTVASFCAEDKVMELYRKKCEDPMKTGIWQGLISGLGFGVSFFLLFCVYATSFYAGARLVAAGETSFSNVFRVFFALTMAAIGVSQFSTISPDSGKAKSVTAAIFGIIDKKSEIDPSDETGTTLDIVEGEIELHQVSFNYPSRPKIQIFRDLNLVIHSGKTVALVGESGCGKSTVISLLQRFYIPNSGEIKLDGVPIEELQLKWFRQQMGLVSQEPVLFNDTIRGNIAYGKGGEASEAEIITAAEQANAHVFISALQQSYNTVVGERGTQLSGGQKQRVAIARALIKSPKILLLDEATSALDAESERVVQDALDKVIVNRTTVVVAHRLSAIKNADLIAVVKDGVIVEKGSHETLVKVTNGFYASLVQLHSNGSKTRVP | 959 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium14384g00001 | 959 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 390 | 676 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Vium14384g00001 | 959 | FunFam | ABC transporter B family member 1 | 369 | 677 | - | - | |
Vium14384g00001 | 959 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 49 | 285 | IPR003439 | GO:0005524 | |
Vium14384g00001 | 959 | Pfam | ABC transporter | 730 | 879 | IPR003439 | GO:0005524 | |
Vium14384g00001 | 959 | CDD | ABC_6TM_Pgp_ABCB1_D2_like | 379 | 694 | - | - | |
Vium14384g00001 | 959 | CDD | ABC_MTABC3_MDL1_MDL2 | 49 | 287 | - | - | |
Vium14384g00001 | 959 | SMART | AAA_5 | 738 | 932 | IPR003593 | GO:0016887 | |
Vium14384g00001 | 959 | SMART | AAA_5 | 76 | 262 | IPR003593 | GO:0016887 | |
Vium14384g00001 | 959 | Gene3D | ABC transporter type 1, transmembrane domain | 1 | 304 | IPR036640 | GO:0005524|GO:0016020 | |
Vium14384g00001 | 959 | Pfam | ABC transporter | 67 | 216 | IPR003439 | GO:0005524 | |
Vium14384g00001 | 959 | MobiDBLite | consensus disorder prediction | 323 | 362 | - | - | |
Vium14384g00001 | 959 | CDD | ABC_MTABC3_MDL1_MDL2 | 711 | 949 | - | - | |
Vium14384g00001 | 959 | SUPERFAMILY | ABC transporter transmembrane region | 376 | 696 | IPR036640 | GO:0005524|GO:0016020 | |
Vium14384g00001 | 959 | FunFam | ABC transporter B family member 1 | 39 | 288 | - | - | |
Vium14384g00001 | 959 | Gene3D | ABC transporter type 1, transmembrane domain | 369 | 678 | IPR036640 | GO:0005524|GO:0016020 | |
Vium14384g00001 | 959 | PANTHER | ABC TRANSPORTER B FAMILY | 367 | 949 | IPR039421 | - | |
Vium14384g00001 | 959 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 38 | 287 | IPR027417 | - | |
Vium14384g00001 | 959 | ProSitePatterns | ABC transporters family signature. | 851 | 865 | IPR017871 | GO:0005524|GO:0016887 | |
Vium14384g00001 | 959 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 711 | 948 | IPR003439 | GO:0005524 | |
Vium14384g00001 | 959 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 702 | 949 | IPR027417 | - | |
Vium14384g00001 | 959 | Gene3D | - | 39 | 288 | IPR027417 | - | |
Vium14384g00001 | 959 | Gene3D | - | 701 | 951 | IPR027417 | - | |
Vium14384g00001 | 959 | ProSitePatterns | ABC transporters family signature. | 188 | 202 | IPR017871 | GO:0005524|GO:0016887 | |
Vium14384g00001 | 959 | Gene3D | ABC transporter type 1, transmembrane domain | 679 | 953 | IPR036640 | GO:0005524|GO:0016020 | |
Vium14384g00001 | 959 | MobiDBLite | consensus disorder prediction | 323 | 340 | - | - | |
Vium14384g00001 | 959 | Pfam | ABC transporter transmembrane region | 389 | 661 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Vium14384g00001 | 959 | FunFam | ABC transporter B family member 1 | 701 | 951 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium14384g00001 | Vium-Chr14384 | 2558 | 7428 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium14384g00001 | 1 | 958 | Calmodulin-binding Proteins | AT2G36910 | 45.988 | 0.0 | 815 |