Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14383g00002 ATGCGGAGCTTCAGGATGAGAACCCTATTGTCCAGTGTAAAGAGGAGAACAAAGAAAACTATCAGAAACCGAAAAATAACCATAGGAAACTGCATTTCCATATCAAAAGAGTTAGCACGTCTAGTGGAACAAAAACACGAAGAAGAAGAAGAAGAAGAAGAATTTATTGAGGAAGGTTTCAGCATCAAAAGTTCTGCTCCATCACACACTCACGGTGTTCAGCCCTTGGGAAATCTCTATCTGAACTCCAGTTCCGTTAACTCTAGAGACACCGGCTTAGGTAATCTTCATACTCTTTCGGATGAGCTTGTTCTTGACATGCTTGGGTTTTTGGATGCTTCTTCCTTAGGGGTTTTGGCCGCTGTGAGCAAGTCTTTCTACGTGTTCACCAACCATGAACCCCTTTGGAAGAATCTCGTGTTGGAGAACTTTCTAAGTGGGTTTCAGTACAAAGGGTCTTGGAAATCTACCTATGTATCGGCCTGTTACCCTTCATTTGGTAACTCTGCTATTGCTCTCGGGGATTTCAAAGTTAGAGACTTTTACTCGGATTATCTTTTCCAGAGTTGGCTCTGTGCTAACCTTGAAATGAAGCCTGAGTGGTTGGAGAGGGATAATGTGGTTCGAAAGAGGGGAATTTCGGTTGAGGAGTTTGTGTTGAATTTTGAGGAGCCTAATAGGCCGGTGTTATTGGAAGGGTGTATTGATAATTGGAGTGCATTGGGAAATTGGGATAGGGATTATTTGGTAAGATTGTGTGGTGATGTTAAGTTTTCAGTTGGGCCAGTGGAGATGAAGCTTGGAGATTACTTTGGGTACTCAGATCAGGTTAGAGAGGAAAGGCCTCTATATTTGTTTGATCCTAAATTTGCTGAAAAAGTTCCAAAATTGGGTGATGAATATGAAGTTCCAGTGTACTTTAGGGAAGACTTGTTTGGTGTTTTGGGCAATGAGAGGCCAGACTACAGGTGGATTATTATCGGACCTGCAGGGTCTGGATCCTCTTTCCATGTTGATCCAAATTCGACCTCAGCTTGGAATGCAGTGATCAAGGGATCCAAGAAATGGATTTTGTTTCCTCCTGATGTGATTCCGCCTGGTGTTCATCCTAGTCCTGATGGGGCCGATGTTGCATCTCCTGTTTCAATAATTGAATGGTTCATGAACTTCTATGGTGCAACCAAAAATTTGAAAAAGAAACCAATTGAGTGTGTATGTAAAGCTGGAGAGCTCATCTTTGTGCCTAGTGGATGGTGGCATTTGGTGATCAACCTGGAGGAGTCTATCGCCATAACCCAAAACTATGTTAGTAGGAGAAATTTGGTAAAGGTCTTGGATTTTCTTAAAAGGCCAAATGCTAGCACTCTGGTATCTGGAACAAGGGATCGAGTGAATTTGTATGATAAGTTTAAGAATGCTATTGAGGCTTCTTTTCCAGGAGAAATTGATGAATTGACTCGGAAAGAAGAAGAGAGAAAGATCCAGCAAAGAAAACTTTCCTTTTGGGATTCTGTCCAGGATGCTAATGTAGGAGCTTTTAAGTTTTCTTTCTAG 1554 0.4183 MRSFRMRTLLSSVKRRTKKTIRNRKITIGNCISISKELARLVEQKHEEEEEEEEFIEEGFSIKSSAPSHTHGVQPLGNLYLNSSSVNSRDTGLGNLHTLSDELVLDMLGFLDASSLGVLAAVSKSFYVFTNHEPLWKNLVLENFLSGFQYKGSWKSTYVSACYPSFGNSAIALGDFKVRDFYSDYLFQSWLCANLEMKPEWLERDNVVRKRGISVEEFVLNFEEPNRPVLLEGCIDNWSALGNWDRDYLVRLCGDVKFSVGPVEMKLGDYFGYSDQVREERPLYLFDPKFAEKVPKLGDEYEVPVYFREDLFGVLGNERPDYRWIIIGPAGSGSSFHVDPNSTSAWNAVIKGSKKWILFPPDVIPPGVHPSPDGADVASPVSIIEWFMNFYGATKNLKKKPIECVCKAGELIFVPSGWWHLVINLEESIAITQNYVSRRNLVKVLDFLKRPNASTLVSGTRDRVNLYDKFKNAIEASFPGEIDELTRKEEERKIQQRKLSFWDSVQDANVGAFKFSF 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14383g00002 517 Pfam Cupin-like domain 217 435 IPR041667 -
Vium14383g00002 517 SUPERFAMILY F-box domain 88 160 IPR036047 GO:0005515
Vium14383g00002 517 SMART cupin_9 283 452 IPR003347 -
Vium14383g00002 517 Gene3D Cupin 186 437 - -
Vium14383g00002 517 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 93 515 - -
Vium14383g00002 517 Gene3D - 84 164 - -
Vium14383g00002 517 Coils Coil 31 58 - -
Vium14383g00002 517 ProSiteProfiles JmjC domain profile. 292 452 IPR003347 -
Vium14383g00002 517 SUPERFAMILY Clavaminate synthase-like 209 450 - -
Vium14383g00002 517 FunFam F-box protein At1g78280 187 437 - -
Vium14383g00002 517 ProSiteProfiles F-box domain profile. 93 139 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14383g00002 Vium-Chr14383 18930 23626 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14383g00002 87 441 Glycosyltransferase AT1G78280 39.560 1.00e-77 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vium14383g00002 Cupin_8 8.4e-23 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14383g00002 - - gmx:100782241 936.406