Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1437g00017 ATGGCATCATCATCCTCATCGTCAATGATCACAAACCCGCCAACAGCGAGCACGGAGCGGTCACGTGACGCCAAGAGAAGAAAGAAGAAGAAAACACAGGAACGAGAGGACGAGAAGCAGCCCAGGTGGAAATCCCAATCGCAGCAACAAATCTACTCCTCCAAGCTGCGCCAAGCCTTAGCCAGAGTCAACCTCGGCTCCGCGTCGCCAAAAGGCAAAGCCGTGCGCGAAGCTGCCGACAGAGTCCTGGCCGTGACGGCCAGGGGAAGGACGCGCTGGAGCCGAGCCATCCTCACCAACCGGCTCAAGCTCAAGTTCACGAAACACAAGAGACAGAGAGTGGCGGCGACGTCCCCTGGCCGGTCGAAGAGAGCTCGCGTGAGCGTTCACCGGTTGAAGGCGAAGGGTGGAGCGAGTGTGCAGAGGAAAGTTAGGTTCCTGGGACGGTTGGTTCCCGGTTGCCGGAAAGAACCGTTGCCGGTTGTTCTGGAAGAAGCCATCGATTACATACCCGCGCTTGAGATGCAGGTTCGAGCCATGAACGCTCTCTTTAACCTTCTCTCCGCCGCTTCTCCTTCTTCGTCTTCTTTTCCTTCCTCGTAA 603 0.5721 MASSSSSSMITNPPTASTERSRDAKRRKKKKTQEREDEKQPRWKSQSQQQIYSSKLRQALARVNLGSASPKGKAVREAADRVLAVTARGRTRWSRAILTNRLKLKFTKHKRQRVAATSPGRSKRARVSVHRLKAKGGASVQRKVRFLGRLVPGCRKEPLPVVLEEAIDYIPALEMQVRAMNALFNLLSAASPSSSSFPSS 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1437g00017 200 MobiDBLite consensus disorder prediction 1 18 - -
Vium1437g00017 200 MobiDBLite consensus disorder prediction 1 50 - -
Vium1437g00017 200 CDD bHLH_AtIBH1_like 131 183 IPR044549 GO:0006355
Vium1437g00017 200 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 45 187 IPR044660 GO:0006355
Vium1437g00017 200 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 143 192 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1437g00017 Vium-Chr1437 147795 149314 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1437g00017 38 189 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06590 55.556 5.24e-50 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1437g00017 - - pvu:PHAVU_003G116200g 283.493