Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1437g00016 ATGGAGGAGAAGAGAGAGAAAGAAGCGAACTCAAAGTCATCATCCACCATGGCAAATTCTGTGGCATTTTCCGACGAGATTCCCAACATGACCATGACCATGTCCTTCCCTTTCTCCCCTGCTTTCTCCACCATCTTCGACATCATGCCACCTCTTCCTCCACCGCCATCTTCGTCCTTGCCTCACGATCCAAAAGCTTCAAACTTTCCCTTCATGGACTTGCTGTCTGTCCCTGATTATATCCCTTCCTTATTCGACTGGCCCCAAAACACCGCCGTCACCTCACCACCACCGCCACCAGCCCCCACCCAAATCACCCACGCGCTTCCCTCCCCGGCCAGCTCCAATGTCCCCGACGGAGGCTCCGAGGTCCTCAACACTCCTCCGTCTCCCAACTACTCCTCGATTTCCTCCTCCTCGAATGAGGCCGCCGCGGCCGCCGCCAACAAAGCAACTGGAAATGAAGACGAACCGGAGGAGGATGAAACGGCAACAGATGCAGCAGGAAAAGGAGAAGACCAAGATCAAGACAAGTCTAAGAATCAGCCGAAGCCGAAAAAGAAGCACCAAAAGAAGCCAAGAGAACCAAGATTTGCGTTCAAGACAAAGAGTGAAGTGGATCACCTCGACGATGGCTATAGGTGGCGCAAGTACGGTCAGAAAGCCGTCAAAAACAGCCCTCATCCCAGGAGCTACTATCGTTGCACCACCGCGGCATGCGGCGTGAAGAAGCGCGTGGAGCGTTCCTCGGAGGACCCTGCGGTGGTGGTGACAACCTACGAGGGGCAACACACGCACCCTTGTCCTGCCACGTCACGGGCTAGCCTCGGGTTCTTGCACTCCGAACCAAGCGCGTTCGGACCCACCAGTGGACTCTTCATGCTGCAACAACAACAACACCAACAGTTTCGTCATGACCAAGCACAGGCACAGGCACAAGCACAAGCTCAAGCTCAAGTAGCAATGTTGTACAACTCCACAACCACCAGCACCTCGTCTTCATCATCACCTCTGAATGTTGTTAACTCAGCTACTTGTATAAACGACTATGCCAATACGTCGTCGTTGAGTGGGTTCCTTCAGAGCCAAGAGAATCTGCGAGCTTTTGCGCTATCTAGGGTGGGAGGTCCTCAGGGTTTCTTCAATGGGCTTCTTCAGGACATGCTGCCAACGCAGATGATGAATGAAGAGAGGGGAGATCGTGTCTAG 1209 0.5368 MEEKREKEANSKSSSTMANSVAFSDEIPNMTMTMSFPFSPAFSTIFDIMPPLPPPPSSSLPHDPKASNFPFMDLLSVPDYIPSLFDWPQNTAVTSPPPPPAPTQITHALPSPASSNVPDGGSEVLNTPPSPNYSSISSSSNEAAAAAANKATGNEDEPEEDETATDAAGKGEDQDQDKSKNQPKPKKKHQKKPREPRFAFKTKSEVDHLDDGYRWRKYGQKAVKNSPHPRSYYRCTTAACGVKKRVERSSEDPAVVVTTYEGQHTHPCPATSRASLGFLHSEPSAFGPTSGLFMLQQQQHQQFRHDQAQAQAQAQAQAQVAMLYNSTTTSTSSSSSPLNVVNSATCINDYANTSSLSGFLQSQENLRAFALSRVGGPQGFFNGLLQDMLPTQMMNEERGDRV 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1437g00016 402 FunFam WRKY transcription factor 57 195 269 - -
Vium1437g00016 402 SUPERFAMILY WRKY DNA-binding domain 202 269 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium1437g00016 402 SMART WRKY_cls 209 268 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium1437g00016 402 MobiDBLite consensus disorder prediction 107 147 - -
Vium1437g00016 402 ProSiteProfiles WRKY domain profile. 204 269 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium1437g00016 402 Gene3D WRKY domain 195 270 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium1437g00016 402 MobiDBLite consensus disorder prediction 91 205 - -
Vium1437g00016 402 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 116 310 IPR044810 GO:0003700
Vium1437g00016 402 MobiDBLite consensus disorder prediction 92 106 - -
Vium1437g00016 402 MobiDBLite consensus disorder prediction 164 182 - -
Vium1437g00016 402 Pfam WRKY DNA -binding domain 210 267 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1437g00016 Vium-Chr1437 100641 102920 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1437g00016 99 293 WRKY Transcription Factor Family AT2G47260 50.254 4.36e-48 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium1437g00016 WRKY 1.7e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1437g00016 - - gsj:114394278 452.981