Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1437g00015 ATGAACTACCACAATACGCGCCGGAGCCCTTCCGATTTCCGCTCTGGCGCTGCCCCTAACCCCCGCGCCTTCGACAGTCCTCCACGTCGCTCTCCTGGGAGGGGAGGAGGATTCCGGCCGATGGGCGGAGAAGGTCCTGGGGAATTCGGATTCAACGGCCACCAGCCGCCGCTGGTTGGCCAGAAACGAGGGTTTCCTGTCGCCGGGCGCGGAGGCGGTTCACCAGATCGTTTAGATGGTGGAAATTTTGCGAAGCTTTTTGTTGGATCTGTTCCCCGAACAGCTGTTGAAGATGATATTCGTCCATTGTTTGAGGAACATGGGAATGTGATTGAGGTTGCCCTCATCAAAGATAGAAAGACAGGACAACATCAAGGTTGTTGTTTTATAAAATATTCTATTGTAGAAGAAGCTGAAGCAATTAGAGCACTACACAATCAACACACTCTTCTTGGAGGTGTTGGTCCTATACAAGTGCGATATGCTGATGGTGAACGGGAACGCCTTGGTGCAGTTGAATTTAAGTTATTTGTGGGCTCTCTGAACAAGCAAGCTCCCGTAAAGGAAGTTGAGGAAATTTTCTCAAAATATGGTCGGGTTGAAGATGTTTATCTTATGCGTGATGAGAAGAAACAAAGTCGTGGATGTGGTTTTGTCAAATACTCTCACAGAGATATGGCTGTGGCAGCTATTAAGGATCTTGATGGACTCTACACAATGAGAGGTTGTGAGCAACCACTAATTGTCCGGTTTGCTGATCCTAAAAGGCCTCGCCAAGGAGATTCCAGGGGTCAGGCCTTTGGAGGCCCAGGATTTGGTCCTAGATTTGATGCACCAGGTTCAAGACTTCCATCCAATGTTACAGATCCTATGGGCGATCGAATGCCTCCCCCTAATGCTTGGCGACCAATGCAACCCCCAAATATGGGGCCATCCACTAATGCTGGTGTTCATGGCATGGGGCCACCAATGCTTCCAAGATCTGGTGAAATGACATTGCCTACAAATGCAGGCGGTCCTATGACTGGCTTGGGAGGCCCCATAGATGGTCGTTTTCAAGTTCAGTCTATGCCATCAATGTCACAACAGAATTTCAATCAGTCCATGCCACAAATTCCGCCACAGAATCAACAAATATCACCCTTGCAGAAACCTATTCAATCATCACAGGAGTTGCCATCATCCCATCAGTTGTACCCTCAAGCACCAGTTCCCTACCCACAAACATCTGTTAGACAGCATGGCCAGCCACATCTTCCTCCTTCTGCTGGTCCTCTTCAATCTCAGCAGATACATGGAGTAAGTGGACAGTTTCCAACTTCTCAACCGCAACCAAATGCTTTGTCTGCTGCATTTCCTCAGGCTCCTCTTGACACCGGCATGCAATCTAATACTGCATTAGCTACAAATCAACAGCAAGTTCCTCCCTCCGTGCCACAACAGCCTATTCAGCAATCCCCTTCTCCGTTAGCCCAGATGCTGTCGCAACAGACACAGACTTTGCAAGCAAGCTTTCATTCATCTCAGCAGGCCTTCTCCCAGCTTCAACAACAACTGCAGATGATGCAGCCTTCTAGTCAAGCATTATCATTGCAGCAAAATGCAGAAGCTACTAAAAAGCATTCTCAATGGGTTGGGACTGTAGCACAACCAGTGGCCAGCACTCATGCAACTGCACCTGCTGCAGATGCCCCTTCATCCATACTTGCTACTTCAGCCTTACCAGCAATAAACCATAACTCGGCACTTGCCAAATGTAATTGGACAGAACATATATCTCCTGAGGGCTTCAAGTACTACTATAATAGTGTCACTGGTGAAAGTCGGTGGGAGAAACCTGAGGAGTTGACGTTATATGAACAGCAACAGCAAAGGGTATCTGTTCAGCAGTCTCACGCTCAGTCACAACCTTCGGTACTACCTGCCCAGCAAATTCCACAGTTCCAACAGGTTCAGCCTCAGAGTCATCACCAAGGACAAGTTCTTCACCAGCAACAAGCACAACAGCCTCCTTTGTCCTCTTCATTCCAGCCTTATGGCGTTACAGGCCCTCAAAATGTTCAGGAAGTTGGTTATAAACAGTTACAGCCAACTGTTATTTCAGCTGGTGATCCAGGACGTTACTTACAGGGTGTTCATTCTACACAAGAATTGATGTGGAAAAATAAGCCTTCAGGAGTATGA 2184 0.4785 MNYHNTRRSPSDFRSGAAPNPRAFDSPPRRSPGRGGGFRPMGGEGPGEFGFNGHQPPLVGQKRGFPVAGRGGGSPDRLDGGNFAKLFVGSVPRTAVEDDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYSIVEEADXAIRALHNQHTLLGGVGPIQVRYADGERERLGAVEFKLFVGSLNKQAPVKEVEEIFSKYGRVEDVYLMRDEKKQSRGCGFVKYSHRDMAVAAIKDLDGLYTMRGCEQPLIVRFADPKRPRQGDSRGQAFGGPGFGPRFDAPGSRLPSNVTDPMGDRMPPPNAWRPMQPPNMGPSTNAGVHGMGPPMLPRSGEMTLPTNAGGPMTGLGGPIDGRFQVQSMPSMSQQNFNQSMPQIPPQNQQISPLQKPIQSSQELPSSHQLYPQAPVPYPQTSVRQHGQPHLPPSAGPLQSQQIHGVSGQFPTSQPQPNALSAAFPQAPLDTGMQSNTALATNQQQVPPSVPQQPIQQSPSPLAQMLSQQTQTLQASFHSSQQAFSQLQQQLQMMQPSSQALSLQQNAEATKKHSQWVGTVAQPVASTHATAPAADAPSSILATSALPAINHNSALAKCNWTEHISPEGFKYYYNSVTGESRWEKPEELTLYEQQQQRVSVQQSHAQSQPSVLPAQQIPQFQQVQPQSHHQGQVLHQQQAQQPPLSSSFQPYGVTGPQNVQEVGYKQLQPTVISAGDPGRYLQGVHSTQELMWKNKPSGV 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1437g00015 728 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 84 165 IPR000504 GO:0003723
Vium1437g00015 728 ProSitePatterns WW/rsp5/WWP domain signature. 589 614 IPR001202 GO:0005515
Vium1437g00015 728 Pfam WW domain 588 614 IPR001202 GO:0005515
Vium1437g00015 728 Gene3D - 79 170 IPR012677 -
Vium1437g00015 728 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 175 255 IPR000504 GO:0003723
Vium1437g00015 728 MobiDBLite consensus disorder prediction 355 450 - -
Vium1437g00015 728 MobiDBLite consensus disorder prediction 457 492 - -
Vium1437g00015 728 FunFam flowering time control protein FCA isoform X2 78 170 - -
Vium1437g00015 728 CDD WW 586 616 IPR001202 GO:0005515
Vium1437g00015 728 Gene3D - 171 263 IPR012677 -
Vium1437g00015 728 SUPERFAMILY RNA-binding domain, RBD 175 277 IPR035979 GO:0003676
Vium1437g00015 728 PANTHER RNA BINDING PROTEIN 52 524 - -
Vium1437g00015 728 MobiDBLite consensus disorder prediction 255 492 - -
Vium1437g00015 728 SUPERFAMILY RNA-binding domain, RBD 22 163 IPR035979 GO:0003676
Vium1437g00015 728 SMART rrm1_1 176 251 IPR000504 GO:0003723
Vium1437g00015 728 SMART rrm1_1 85 161 IPR000504 GO:0003723
Vium1437g00015 728 MobiDBLite consensus disorder prediction 628 685 - -
Vium1437g00015 728 Gene3D - 582 630 - -
Vium1437g00015 728 MobiDBLite consensus disorder prediction 1 77 - -
Vium1437g00015 728 SMART ww_5 584 616 IPR001202 GO:0005515
Vium1437g00015 728 SUPERFAMILY WW domain 588 621 IPR036020 GO:0005515
Vium1437g00015 728 FunFam Flowering time control protein FCA 171 261 - -
Vium1437g00015 728 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 177 245 IPR000504 GO:0003723
Vium1437g00015 728 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 86 148 IPR000504 GO:0003723
Vium1437g00015 728 ProSiteProfiles WW/rsp5/WWP domain profile. 589 616 IPR001202 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1437g00015 Vium-Chr1437 67008 80821 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1437g00015 84 290 Eukaryotic Initiation Factors Gene Family AT1G71770 23.474 3.30e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1437g00015 - - gmx:100798390 1068.91