Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1437g00008 ATGCAATTAGTACTATTGTGTCTAGTGATGCTTAAGCTCACTCCAGCCTTTGCAACCACCCTGAATGATGCCTACGGTGGTGATCCTGGTTGTCCGTTAGGGAGTGGCATATACCGCCACACTTGCCCAGAGGCTGAGGCCATTATCTTCTATTGGGTGGAGCAGGCAGTGGCTGAAGACTCGAGAATGGCAGCCTCACTGCTTAGGCTACATTTCCATGATTGCTTTGTCAATGGTTGTGATGCTTCAGTCTTGCTGGATGACACACAGGACTTTGTTGGTGAGAAAACTGCCGGGCCAAATTTGAATTCTCTCAGAGGATTTGAAGTGATCGACAAAATCAAATCTGAGCTGGAACTACTCTGTCCACAGACTGTCTCTTGTGCTGACATACTGGCAACTGCTGCAAGAGATTCAGTTCTTCTGTCAGGAGGTCCAATTTGGGAGGTGCAAATGGGAAGGAAAGATAGCATTACTGCCAGTAAGGATGCAGCAAATAATAACATCCCAGGTCCAAACTCCACTGTTGATGTGCTGGTAGCCAAGTTCGAGAATTTAGGCCTTACACTTAAAGACATGGTTGCCCTTTCAGGTGCACACACAATAGGGAAAGCACGCTGCACAACATTCAGCTCTAGATTACAGAGTAGTAGCGACTCAGAAAACATTGATTTCATCGCATCATTGCAACAGTTGTGCTCAGGGTCAGATAATGGTAACATAGTTGCACATCTTGACTTGGCTACACCTGCTACCTTTGATAACCAATACTTCGTTAATCTTCTCTCTGGGGAGGGATTGCTCCCATCAGACCAGACTCTTGTGAATGGAAATGATCAGACACGACAGATTGTGGAAAACTATGTGGAGAACCCATTAGCTTTCTTTGAAGACTTCAATCATTCAATGTTGAAAATGGGAAGCTTGGGATCACCAAGTAATGGCCAGATTCGTAGGGACTGCCGAACTGTTAACTAG 978 0.455 MQLVLLCLVMLKLTPAFATTLNDAYGGDPGCPLGSGIYRHTCPEAEAIIFYWVEQAVAEDSRMAASLLRLHFHDCFVNGCDASVLLDDTQDFVGEKTAGPNLNSLRGFEVIDKIKSELELLCPQTVSCADILATAARDSVLLSGGPIWEVQMGRKDSITASKDAANNNIPGPNSTVDVLVAKFENLGLTLKDMVALSGAHTIGKARCTTFSSRLQSSSDSENIDFIASLQQLCSGSDNGNIVAHLDLATPATFDNQYFVNLLSGEGLLPSDQTLVNGNDQTRQIVENYVENPLAFFEDFNHSMLKMGSLGSPSNGQIRRDCRTVN 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1437g00008 325 PRINTS Haem peroxidase superfamily signature 64 78 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium1437g00008 325 PRINTS Haem peroxidase superfamily signature 144 156 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium1437g00008 325 PRINTS Haem peroxidase superfamily signature 126 143 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium1437g00008 325 PRINTS Haem peroxidase superfamily signature 192 207 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium1437g00008 325 PRINTS Haem peroxidase superfamily signature 246 261 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium1437g00008 325 FunFam Peroxidase 170 306 - -
Vium1437g00008 325 SUPERFAMILY Heme-dependent peroxidases 33 325 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vium1437g00008 325 PRINTS Plant peroxidase signature 144 159 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1437g00008 325 PRINTS Plant peroxidase signature 260 277 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1437g00008 325 PRINTS Plant peroxidase signature 191 203 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1437g00008 325 PRINTS Plant peroxidase signature 66 86 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1437g00008 325 PRINTS Plant peroxidase signature 106 119 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1437g00008 325 PRINTS Plant peroxidase signature 42 61 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1437g00008 325 PRINTS Plant peroxidase signature 125 135 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1437g00008 325 PRINTS Plant peroxidase signature 244 259 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1437g00008 325 PRINTS Plant peroxidase signature 301 314 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1437g00008 325 Gene3D Peroxidase, domain 2 170 306 - -
Vium1437g00008 325 ProSiteProfiles Plant heme peroxidase family profile. 32 325 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium1437g00008 325 CDD secretory_peroxidase 33 324 IPR033905 GO:0004601|GO:0042744
Vium1437g00008 325 FunFam Peroxidase 36 182 - -
Vium1437g00008 325 Pfam Peroxidase 53 290 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium1437g00008 325 ProSitePatterns Peroxidases active site signature. 64 75 IPR019794 GO:0004601
Vium1437g00008 325 PANTHER PEROXIDASE 72-RELATED 33 324 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1437g00008 325 ProSitePatterns Peroxidases proximal heme-ligand signature. 192 202 IPR019793 -
Vium1437g00008 325 Gene3D - 38 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1437g00008 Vium-Chr1437 27823 31196 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1437g00008 36 325 Peroxidase AT4G16270 64.189 9.28e-141 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1437g00008 K00430 - gmx:100787637 565.459