LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium14364g00001	AGAACACTGCAGCTCCTAGATTCTGGGAATCTAGTACTAAAAGAGGATGACTCTGAAGCGACATACCTGTGGGAAAGCTTCCAGAACCCAACAGACACGTTTCTTCCCGGCATGAAAATGGATGCGACTTTGTCGTTGACTTGTTGGAGAGACTCCTCTAACCCAGCACCTGGGAACTTCACCTTCAAGCTGACTCAAAAGGCTGAGACACGGAGCTTCGTTGTGCAATATCAATCACAAATCCACTTGGCACTTGATGAATATGACACAGAAGCGGCTTCCCAGAAGGTATTTAATTTGTTGAACAACGACATCTGGAGTGCTAAAACGTATAATTATTCTAACAAAACACTATTCGTATCAAAACCTTATGTGTACTATAAATCAAGGCTTTTGATGAATTCTAGCGGGGAGATAGTGTTTCTGGAGTGGGATGAGGCAGAATCAAATTGGACTAAGATATGGTCGGCGCCAGAGAACAACTGTGACCTACCTGACTATTGTGGGAGCTTCAGCCTATGTAACAGAGATAACTTCATTCAGTGCAAATGTTTGCCAGGATTCAGTCGTATTCATGATTCTCGTTCTGATGGAGAATCCGAGTCCAAAGGATGTGTGAGAAAATCAGGATCGTGTACCAACAAGGACGTGATGTTCCTGAACTTAACCAAGATAAAAGTGGGCGACCCAGACCAACAAATTTATGCTCAAACAGAAGCAGAATGCCAATCCATCTGCATCGACATGTGTCCCGAATCACAGTGCCAAGCCTATTCATTTAATATTTCGACCAATCGCGACGATAATTTATACTCGTGCAGAATCTGGACGCGGCCTTTACCTTCTCTTGTTGAGAAGTACGCGCGCGGTAGTGATCTTTCTATCTTGGTTAAAACATCAGATATAGCACCAACTGCTAAATCGTGTGAACCTTGCGGCACATATGTCATTCCCTATCCGCTGAGCACTGGACCAAACTGTGGAGACCCCATGTACAACAAGTTCAATTGCGACAATTCCACTGGCAAAGTTAGTTTTATGATTCCCGGACGTATATCATACCCAGTAACTTGGATCGATGAAGATTCCAGAATGTTTGCCATTCAAACAGACGATTTCTATTCCTTCAATTACAGTTTCAGCAGTCAGAATAGCACTGATTTTCCGTTTAAGGTAGCTCAGTACAATGAAGATGCCGTAATAAAAATCAGTTGGTTACCAGCGCCAGAACCCCCCTGTAGTCAGCGTACAGACTGCATTAGTTGGCCAAATTCAACATGCAGAGCAACAGGGGAAGGTGGAAGTAGGTGCCTTTGTAATTCAAACTATAAATGGAATAACACATTAATGAGCTGCACCCAAGAGCAATCAGGAAATCACTCAACTCGACTAGAACTGATTCTTTTAGCAACTCTTGGTTCCCTGGCTGCTGTGACATGCATAATAGCTTTTGGCTTCGTGTGGAGAAAGAAAAAGCCCCGTAAACATGACCGAGCAAGCACCCGAATTCAGGAGAGCTTGTATGAGAGTGAAAGACATGTGAAAGGTTTGATTGGCTTAGGAAGTTTAGAAGAAAAAGACATCGAAGGCATTGAAGTTCCCTTTTACACTTTTGCAAGCATTCTCGCAGCTACAGATAGTTTCTCGGATTCTAACAAGCTTGGAAGAGGAGGTTATGGACCTGTTTATAAGGGAACGTTTCCAGGAGGTCAAGAAATAGCTGTAAAGAGACTTTCAAGTGTTTCCACTCAAGGCCTGCAAGAATTCAAAAATGAGGTTATTTTGATTGCCAAACTTCAACATCGGAACCTTGTTAGACTGAGGGGCTACTGCATAAAAGGGGATGAAAAAATCTTACTTTATGAATACATGCCAAATAAGAGTTTGGACTCATTTATATTTGACCGTAGTCGAACTATACTGTTGGATTGGCCGATGCGGTTTGAGATAATAGTAGGCATAGCACGAGGCATGCTATACCTTCATCAAGACTCTAGATTGAGAGTGATTCATAGAGACATGAAAACCAGCAACGTTCTCTTAGACGAGGAAATGAATCCAAAGATATCTGACTTTGGTCTTGCCAAAATATTTGGAGGAAAAGAAACTGAAGCAAGTACAGGGAGAGTGATGGGAACCTATGGATACATGGCTCCAGAGTACGCTTTGGATGGACTTTTTTCAGTGAAATCTGATGTTTTCAGTTTTGGAGTGGTCCTACTGGAGATTCTTAGTGGAAAAAAGAACACAGGATTCTATGAGTCCAAACAAATTTCTAGCCTTTTGGGTTATGCATGGAAATTATGGTCAGAGAACAAGATACTGGATTTAATGGATTCTAGTCTTGGTGAAACATGCAACGAAAATCAATTTTTCAAATGTGCAGTTGTTGGATTATTATGCATACAAGATGAACCAAGTAATCGACCAACTATGTCAAATGTTTTGTACATGCTTGACGTAGAGACAACAACCATGCCAATTCCCACGCAGCCAACATTTTTTATGAACAAGCGTTATTCAAGTTCAGCTTCTTCTTCTAGTAAACCAGAAACAAGTCTGCAA	2565	0.4168	RTLQLLDSGNLVLKEDDSEATYLWESFQNPTDTFLPGMKMDATLSLTCWRDSSNPAPGNFTFKLTQKAETRSFVVQYQSQIHLALDEYDTEAASQKVFNLLNNDIWSAKTYNYSNKTLFVSKPYVYYKSRLLMNSSGEIVFLEWDEAESNWTKIWSAPENNCDLPDYCGSFSLCNRDNFIQCKCLPGFSRIHDSRSDGESESKGCVRKSGSCTNKDVMFLNLTKIKVGDPDQQIYAQTEAECQSICIDMCPESQCQAYSFNISTNRDDNLYSCRIWTRPLPSLVEKYARGSDLSILVKTSDIAPTAKSCEPCGTYVIPYPLSTGPNCGDPMYNKFNCDNSTGKVSFMIPGRISYPVTWIDEDSRMFAIQTDDFYSFNYSFSSQNSTDFPFKVAQYNEDAVIKISWLPAPEPPCSQRTDCISWPNSTCRATGEGGSRCLCNSNYKWNNTLMSCTQEQSGNHSTRLELILLATLGSLAAVTCIIAFGFVWRKKKPRKHDRASTRIQESLYESERHVKGLIGLGSLEEKDIEGIEVPFYTFASILAATDSFSDSNKLGRGGYGPVYKGTFPGGQEIAVKRLSSVSTQGLQEFKNEVILIAKLQHRNLVRLRGYCIKGDEKILLYEYMPNKSLDSFIFDRSRTILLDWPMRFEIIVGIARGMLYLHQDSRLRVIHRDMKTSNVLLDEEMNPKISDFGLAKIFGGKETEASTGRVMGTYGYMAPEYALDGLFSVKSDVFSFGVVLLEILSGKKNTGFYESKQISSLLGYAWKLWSENKILDLMDSSLGETCNENQFFKCAVVGLLCIQDEPSNRPTMSNVLYMLDVETTTMPIPTQPTFFMNKRYSSSASSSSKPETSLQ	855

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium14364g00001	855	SUPERFAMILY	alpha-D-mannose-specific plant lectins	2	49	IPR036426	-
	Vium14364g00001	855	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	24	842	-	-
	Vium14364g00001	855	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	669	681	IPR008271	GO:0004672\|GO:0006468
	Vium14364g00001	855	PIRSF	SRK	1	317	IPR024171	GO:0004674
	Vium14364g00001	855	PIRSF	SRK	413	855	IPR024171	GO:0004674
	Vium14364g00001	855	PIRSF	SRK	332	459	IPR024171	GO:0004674
	Vium14364g00001	855	Pfam	D-mannose binding lectin	2	42	IPR001480	-
	Vium14364g00001	855	Pfam	Protein tyrosine and serine/threonine kinase	551	816	IPR001245	GO:0004672\|GO:0006468
	Vium14364g00001	855	Gene3D	Transferase(Phosphotransferase) domain 1	624	827	-	-
	Vium14364g00001	855	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230	515	623	-	-
	Vium14364g00001	855	ProSiteProfiles	PAN/Apple domain profile.	212	300	IPR003609	-
	Vium14364g00001	855	SMART	ntp_6	214	297	IPR003609	-
	Vium14364g00001	855	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	624	827	-	-
	Vium14364g00001	855	Pfam	S-locus glycoprotein domain	125	190	IPR000858	GO:0048544
	Vium14364g00001	855	Gene3D	Phosphorylase Kinase; domain 1	522	623	-	-
	Vium14364g00001	855	SUPERFAMILY	Protein kinase-like (PK-like)	531	819	IPR011009	-
	Vium14364g00001	855	CDD	STKc_IRAK	554	820	-	-
	Vium14364g00001	855	ProSiteProfiles	Protein kinase domain profile.	548	834	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium14364g00001	855	SMART	serkin_6	548	819	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium14364g00001	Vium-Chr14364	6	3330	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium14364g00001	541	834	Receptor kinase-like Gene Family	AT4G23230	58.163	7.22e-123	383

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Vium14364g00001		PK_Tyr_Ser-Thr	1.7e-45	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium14364g00001	-		-	vum:124822486	1738.01