Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14346g00002 ATGAACGATGAATCCAAAAATAAGAATAAAGAAATTCTGTTATTGATTTCGTGGTTATTATCTTCCCTCGCTCGTTCGCGCTTCCTTCTATTCGAAGCTTTTGTGGTGCGGAATCCTTCGGCGGCGGCCATGGAAAATATTGCCGCGCAGCTGAAGCGCGGCATCTCGCGGCAGTTTTCGTCGGGGTCGCTGCGGAAGAGCCTGAGCCGGCAGTTCACGCGCCAGGCCTCGCTCGATCCACGCCGGAACAACCAGCGGTTCAGCTTCGGGCGGCAGTCGTCGTTGGATCCGATACGGAGGAGCCCCGAACACGACGAGGCGGAGCTCACCGTGCCAGATAACCTTGACTCCACCATGCAGCTGCTCTTCATGGCGTGCCGAGGCGACGTCAAGGGGGTTGAGGATTTGCTCAACGAAGGCATCGACGTCAACAGTATCGACCTCGACGGCCGCACCGCCCTCCACATCGCCGCCTGCGAAGGTCACGCCGAGGTTGCCCGGCTCCTCCTCACCCGCAAGGCCAACATCGACGCTCGCGATCGCTGGGGCAGTACCGCGGCGGCCGATGCCAAATATTATGGAAATACAGAGATTTATTACATGTTGAAGGCTCGTGGAGCGAAAGTGCCGAAAACCAGGAAGACTCCAATGACCGTTGCGAATCCTCGTGAAGTTCCGGAATATGAACTCAACCCGTTAGAGCTACAGGTTCGGAAGAGCGAAGGTATTTCAAAAGGAACATATCAAGTAGCTAAATGGAATGGCACAAAGGTTGCAGTGAAGATACTTGACAAGGACAGTTATACAGATCCTGATACCATAAATGCTTTCAAACATGAGCTCACATTATTAGAAAGGGTGCGACATCCCAATCTGGTCCAATTTGTTGGAGCTGTAACCCAAAATGTACCTATGATGATTGTGCGTGAGTACCATGCTAAGGGTGATCTGGCAAGCTATCTACAAAAGAAAGGGCGTTTGTCCCCATCAAAAGTTCTACGTTTTGCTCTAGATATTGCTAGGGGCATGAACTATCTTCATGAATGCAAACCAGAACCGATTATTCACTGTGATTTAAAGCCAAAAAATATTTTGCTCGATAATGGAGGGCAATTGAAGATAGGCGGATTTGGCACTGCGAGATTTTCTCTCATCTCAGCTGATCAAGCAAAGCTGGTGCAGCCTGACCCTAACATTGATCTTTCAAGCTTGTACGTGGCACCAGAGATTTACAAAGATGAAGTATTTGATAGAAGTGCGGATGCATATTCTTTTGGTCTCATTATATATGAGATGTTAGAGGGTACGCCTCCCTTCCATCCCAAGCCCTCGGAGGAGGTAGTGCAACTAATGTGCTTAGAGGGGAAAAGACCGACAATCAAGATCAAAACAAAACATTATCCTCCGGATTTGAAAGAGTTGATTGAGGAATGTTGGGATCCAACTCCTGTAGTCAGGCCAACATTTTCTCAGGTCATTGTACGGTTGAACAAAATTGTTGCAACTTGCTCAAAACAAGGATGGTGGAAAGATACTTTTAAGCTTCCTTGGAAATAA 1557 0.4843 MNDESKNKNKEILLLISWLLSSLARSRFLLFEAFVVRNPSAAAMENIAAQLKRGISRQFSSGSLRKSLSRQFTRQASLDPRRNNQRFSFGRQSSLDPIRRSPEHDEAELTVPDNLDSTMQLLFMACRGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHAEVARLLLTRKANIDARDRWGSTAAADAKYYGNTEIYYMLKARGAKVPKTRKTPMTVANPREVPEYELNPLELQVRKSEGISKGTYQVAKWNGTKVAVKILDKDSYTDPDTINAFKHELTLLERVRHPNLVQFVGAVTQNVPMMIVREYHAKGDLASYLQKKGRLSPSKVLRFALDIARGMNYLHECKPEPIIHCDLKPKNILLDNGGQLKIGGFGTARFSLISADQAKLVQPDPNIDLSSLYVAPEIYKDEVFDRSADAYSFGLIIYEMLEGTPPFHPKPSEEVVQLMCLEGKRPTIKIKTKHYPPDLKELIEECWDPTPVVRPTFSQVIVRLNKIVATCSKQGWWKDTFKLPWK 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14346g00002 518 ProSiteProfiles Ankyrin repeat region circular profile. 149 181 - -
Vium14346g00002 518 SMART ANK_2a 117 145 IPR002110 GO:0005515
Vium14346g00002 518 SMART ANK_2a 149 178 IPR002110 GO:0005515
Vium14346g00002 518 ProSiteProfiles Protein kinase domain profile. 233 500 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium14346g00002 518 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 153 499 - -
Vium14346g00002 518 ProSitePatterns Serine/Threonine protein kinases active-site signature. 354 366 IPR008271 GO:0004672|GO:0006468
Vium14346g00002 518 PIRSF ILK 51 517 - -
Vium14346g00002 518 Gene3D Phosphorylase Kinase; domain 1 229 312 - -
Vium14346g00002 518 SUPERFAMILY Protein kinase-like (PK-like) 244 496 IPR011009 -
Vium14346g00002 518 ProSiteProfiles Ankyrin repeat profile. 149 181 IPR002110 GO:0005515
Vium14346g00002 518 FunFam Integrin-linked protein kinase 1 90 228 - -
Vium14346g00002 518 SUPERFAMILY Ankyrin repeat 110 218 IPR036770 -
Vium14346g00002 518 PRINTS Tyrosine kinase catalytic domain signature 348 366 IPR001245 GO:0004672|GO:0006468
Vium14346g00002 518 PRINTS Tyrosine kinase catalytic domain signature 309 322 IPR001245 GO:0004672|GO:0006468
Vium14346g00002 518 PRINTS Tyrosine kinase catalytic domain signature 467 489 IPR001245 GO:0004672|GO:0006468
Vium14346g00002 518 PRINTS Tyrosine kinase catalytic domain signature 420 442 IPR001245 GO:0004672|GO:0006468
Vium14346g00002 518 MobiDBLite consensus disorder prediction 83 107 - -
Vium14346g00002 518 Gene3D - 74 228 IPR036770 -
Vium14346g00002 518 SMART serkin_6 237 500 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium14346g00002 518 FunFam serine/threonine-protein kinase STY46-like 230 313 - -
Vium14346g00002 518 CDD STKc_MAP3K-like 243 496 - -
Vium14346g00002 518 FunFam Integrin-linked protein kinase family 313 512 - -
Vium14346g00002 518 Gene3D Transferase(Phosphotransferase) domain 1 313 512 - -
Vium14346g00002 518 Pfam Ankyrin repeats (many copies) 136 186 IPR002110 GO:0005515
Vium14346g00002 518 Pfam Protein tyrosine and serine/threonine kinase 243 495 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14346g00002 Vium-Chr14346 15290 22131 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14346g00002 44 517 MAP Kinase Kinase Kinase AT2G43850 76.569 0.0 796
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Vium14346g00002 PK_Tyr_Ser-Thr 1.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14346g00002 - - vum:124822479 1019.99