Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14339g00001 ATGGGGAAGAGAATTCGTGAGAAAGAGTGCGCGTTGCCGAGTAGAAATTGCAGTAGTAGCCATCATACTCATCCAGGACGAGTTTGGGGAATTCTTCATGTTATGAAGTACCATCATTGGCGACAGGTCAAGAGAAGGATTACAAACAGAAGGCATGGTGGTGGAAGACCTGATGAAAGAGTTGAAAGGCCAGGAACTTCTTATGATTCTGGACTTAACTCTAAGCCAGATAATTGTACACCATGTGCAGAGTTTTCTAATTCCCCTTCTCCATCCAAAAGTTCTTCTATCAAATCCCGATTTAGGTCACTTCTCAATGAAGATATATACAAAAGGAAAGGTCGACACAAGAGAAGCTCAACTTGCCCTGCAAAGACATCACTGCAAATACCTCATGCTGATTCTGTTCACAACTTGGAGGTTGACCCACTTAGTGAATTGTTACTAACTGTTGAGAGCCCTGAACCAGTTCTAAGAACCTTTCAGAACCATCTTGCAGAAGGCACACTGGATGTGTTATCACCAGTTTTCTCTGATAAACCAATTGCCAAGAATGACAAATGCGTAGCTTGTGGTACATTGTTTTCTAGTGACACTTTGGAGCAAAGCAAGATTCATAAACACTTGAGCTCTCCTATTCAAGATGGCCCGGAAGAGAAGTTGTTTAATGCCAAGATACTCACAACTGATGCTTCACCCCACCACTTCAGGGACTTTCTTGATGCATTGGATGTGATAAACGCAAACAAGAACTTTCTATTGGAATATATACAGGATCCAGGTTCTCCTTTGCCATTTCACACTAATCGCCAACAATCTTCGAAAGCTAATATTAGACGAACCAGATCTCTTTCATTTCCTGTATCTACCTCATCATCTGGAAAGTAAGATTCTGATCCAGGTCAACTCATACACCAAATGATAGATGATCTGTTAATTGCAGAAAAAAAGAACATACAAACTCAAAGTAACATGCCAAAGCCAAATGAATCCGTACATTACTGTTTACCGTGTAGTTCTTCGCATAATTTCGATCGAGTAGGTGAAAGAGATCCTAATTCGTCACCAGTTTCACCCCAGGTTCCCAACAATGTGAGAACTAGTCACTTCAAGGATCTTAGAAATAAGATGAGGCGCTTAATTGAAGAGGGAAGAAATGAAAGGCGTCGCATTACCATGGATGCCATACTTGACAAAATTCCTCGGGGAAAGAGACTTACAAAAAATATGAAGAAGTTGATTCATGACATGTCCAAAGATCCCACAGTCAATGGGGAAGGTGAAGAAAGTTCAACAAGTGGTTTTCAGAGCCGTCTCTCTTCTATGTCATTCAACAAGCATCAACGATCACCCATGAGGAATTCTTCTCTCAAAGAATCAATTGGAAGATATTCGCAGTTGTACGATACTTGTTTTAATAGTGAAGCCAAGTATCCTAGGGTTGAAAACTCAAGAATCAAAGAACAAAAGGCAAATTCTACATTAAAGACCCCAAAATCCTTCAAAAGGTTTCTATCAATGCCTAATTTGAAATCTTACTTTCACCACAATGAGGAGCCTTCTTTCCTTTTATCCTCCCAAAACTCAATGAAGAGGCATGGAAATAGAAACATCAGCGCAAATGACATTGATCATGACAATAGGAGGTTTAACCGTAGCGATGACTCAAAAAGTCAAATTTTTCCACCTACACTGGTCAATAACACAAATCAAGAAATCAGCTTGAAGTCTGACCAAAAACAAATGCTTGTCAGGAATGCTTCAAAATCAGGAATAAATTTTAGTGCTGAGGAAAAGGAAGATAACGTGGGAATTGAAGGTTTAGAAAACTTGAGAGACCGTGGACAAGACATTGGAGCTGAAATAGATTACCCAGCGGAAGCAAACTCTGTCTTCTCTTCCGATACCAGCTTTCTTGACGTTTCATTTGATCTAGAAGGTATATTTGATCGTTTTATACTTGAATATTTCATTTTGTCCCTAACTTTTAACTTACCATGTTCTTATTTTCTTCATGCATTTTGTGTGTGA 2031 0.3939 MGKRIREKECALPSRNCSSSHHTHPGRVWGILHVMKYHHWRQVKRRITNRRHGGGRPDERVERPGTSYDSGLNSKPDNCTPCAEFSNSPSPSKSSSIKSRFRSLLNEDIYKRKGRHKRSSTCPAKTSLQIPHADSVHNLEVDPLSELLLTVESPEPVLRTFQNHLAEGTLDVLSPVFSDKPIAKNDKCVACGTLFSSDTLEQSKIHKHLSSPIQDGPEEKLFNAKILTTDASPHHFRDFLDALDVINANKNFLLEYIQDPGSPLPFHTNRQQSSKANIRRTRSLSFPVSTSSSGKXDSDPGQLIHQMIDDLLIAEKKNIQTQSNMPKPNESVHYCLPCSSSHNFDRVGERDPNSSPVSPQVPNNVRTSHFKDLRNKMRRLIEEGRNERRRITMDAILDKIPRGKRLTKNMKKLIHDMSKDPTVNGEGEESSTSGFQSRLSSMSFNKHQRSPMRNSSLKESIGRYSQLYDTCFNSEAKYPRVENSRIKEQKANSTLKTPKSFKRFLSMPNLKSYFHHNEEPSFLLSSQNSMKRHGNRNISANDIDHDNRRFNRSDDSKSQIFPPTLVNNTNQEISLKSDQKQMLVRNASKSGINFSAEEKEDNVGIEGLENLRDRGQDIGAEIDYPAEANSVFSSDTSFLDVSFDLEGIFDRFILEYFILSLTFNLPCSYFLHAFCV 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14339g00001 676 MobiDBLite consensus disorder prediction 424 458 - -
Vium14339g00001 676 MobiDBLite consensus disorder prediction 67 98 - -
Vium14339g00001 676 MobiDBLite consensus disorder prediction 45 98 - -
Vium14339g00001 676 MobiDBLite consensus disorder prediction 342 365 - -
Vium14339g00001 676 MobiDBLite consensus disorder prediction 532 563 - -
Vium14339g00001 676 MobiDBLite consensus disorder prediction 417 458 - -
Vium14339g00001 676 MobiDBLite consensus disorder prediction 537 555 - -
Vium14339g00001 676 PANTHER PROTEIN TRM32 1 628 IPR044257 -
Vium14339g00001 676 Coils Coil 370 390 - -
Vium14339g00001 676 Pfam Protein of unknown function (DUF3741) 219 262 IPR022212 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14339g00001 1 515 TRM (TON1 Recruiting Motif) Superfamily AT5G02390 27.196 7.19e-34 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14339g00001 - - vum:124822475 1347.41