Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14320g00002 ATGGAAGCAGAAGAACACTTTCAACTTCCTCGTCTATCTCACGAAGTTGCAAATTCTCCGGTTCAAGGAATGGAAAGCGTGGTGGCAACGGTTAGCGGTTACCACGGCTCCGAGCGGTTCGATCTCATCAAGCTGATTTCACATGCCGGCGCCAATTACGTTGGCACAATGTCAAAATCGATAACGCATTTGGTGTGCTGGAAATTTGAAGGAAAGAAATACGATATTGCGTTGAAGTTTAGAATACCTGTAGTAAACCACCAATGGATTGAGGATTGCATAAAGGAAGGGAGGCGTGTTCCAGAAGATTCTTATACCTTGCAGAGTGGACATGAAGTAGGGCGATTGTTACTGGAAGTTCCCGTCACTGTTCGGACCAGTAGGTTGACACAGAAAAAAATCGTCAGTGACAAGTTACATGATACAGGGACTGAAAGGCAAAAACCTAACTTCGGTTCTGGAATTTCAATAGCTTATGTTTTGGAAGATTCTTGTTTAATGAAAAAGCATGATGAATCAACTTCATATTCGTCTAGACTGTCAAAGAAAGGAAAAAGGAACATTTGTAACGGTAAGGGAGTGATTACTCTAGCTGGACCTTCTCGTAAAGGAAGAAGACTTACGAGAAATCTTGATGATGTGGTGTTGGCTCCTTCAATTTTGGATTTAAGCTCAGATGACCACCTTTTTAAAGCGGATAGACTACAAACAGACGCTGAAGCGACATCTAGCCTTTCTGGTGGTCTCAATAATAACACTATTCTACAAAATAGTGAAGGACCTAATGCTGGATTAAGTACTGAAAATAGAATTATCGATGGTGGTTCAGATGATATTGAACAGATCAAAGATTCAGTTCCTATATCTACGCTTAGAAATTCAACTTTGTTTGTAGAAGATGCCCTACGTGTGCCACAAACATCAATAGATTTATGTTCTAGTGATGAGGAAAAATTCACCGATGGTGATCAGGTTGATAATGGTGCTGGCTTACCTACTTCAACAGAGATGTCATGTGTTATATGTTTCACAGATTTCAGCACAACACGGGGGATTCTGCCATGTGGACATCGATTTTGTTTTCCATGCATCCAGAGTTGGGTTGATCATAGGACTTCAATGAGAAAAACATCAACTTGCCCTCTGTGCAAGGCAAGTTTTGTGATGATTAAGAAAGTCGAGCATGCAGCCACTACGGATCAAAAAGTATACTCCCAGACAATCCCATGTAACAATTCAGCCTCAGAAATTTTTATCCCCATGGATCAAGAATTACCGCATACTACCTTTGAGTCTACACAGACGGGAGCTTGTGTAATTTGCCGTGGTCGGGAACCAGAGGATCTCCTTGAGAATTGTGATATTTGCCAAATTCAAAAAATTCATTCTTATTGCATGGACCCTCCTCTACGGCCATGGACATGCAATCATTGCAAGGAACTTCGGATGCTTTATCGCACTAATCACTATTAG 1473 0.4121 MEAEEHFQLPRLSHEVANSPVQGMESVVATVSGYHGSERFDLIKLISHAGANYVGTMSKSITHLVCWKFEGKKYDIALKFRIPVVNHQWIEDCIKEGRRVPEDSYTLQSGHEVGRLLLEVPVTVRTSRLTQKKIVSDKLHDTGTERQKPNFGSGISIAYVLEDSCLMKKHDESTSYSSRLSKKGKRNICNGKGVITLAGPSRKGRRLTRNLDDVVLAPSILDLSSDDHLFKADRLQTDAEATSSLSGGLNNNTILQNSEGPNAGLSTENRIIDGGSDDIEQIKDSVPISTLRNSTLFVEDALRVPQTSIDLCSSDEEKFTDGDQVDNGAGLPTSTEMSCVICFTDFSTTRGILPCGHRFCFPCIQSWVDHRTSMRKTSTCPLCKASFVMIKKVEHAATTDQKVYSQTIPCNNSASEIFIPMDQELPHTTFESTQTGACVICRGREPEDLLENCDICQIQKIHSYCMDPPLRPWTCNHCKELRMLYRTNHY 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14320g00002 490 Gene3D BRCT domain 20 106 IPR036420 -
Vium14320g00002 490 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 411 483 IPR013083 -
Vium14320g00002 490 PANTHER F5A8.9 PROTEIN 153 487 - -
Vium14320g00002 490 Pfam twin BRCT domain 27 89 IPR001357 -
Vium14320g00002 490 Pfam Zinc finger, C3HC4 type (RING finger) 339 383 IPR018957 GO:0046872
Vium14320g00002 490 SUPERFAMILY FYVE/PHD zinc finger 427 481 IPR011011 -
Vium14320g00002 490 SMART ring_2 339 383 IPR001841 -
Vium14320g00002 490 ProSitePatterns Zinc finger RING-type signature. 355 364 IPR017907 -
Vium14320g00002 490 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 333 404 IPR013083 -
Vium14320g00002 490 ProSiteProfiles Zinc finger RING-type profile. 339 384 IPR001841 -
Vium14320g00002 490 SUPERFAMILY BRCT domain 18 108 IPR036420 -
Vium14320g00002 490 ProSiteProfiles BRCT domain profile. 16 107 IPR001357 -
Vium14320g00002 490 SUPERFAMILY RING/U-box 335 391 - -
Vium14320g00002 490 SMART BRCT_7 21 97 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14320g00002 Vium-Chr14320 10088 16379 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14320g00002 61 113 Core DNA Replication Machinery Family AT4G02110 50.000 8.12e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14320g00002 - - gmx:100815034 787.719