Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14320g00001 ATGTCATGTGTTATATGTTTCACAGATTTCAGCACAACACGGGGGATTCTGCCATGTGGACATCGATTTTGTTTTCCATGCATCCAGAGTTGGGTTGATCATAGGACTTCAATGAGAAAAACATCAACTTGCCCTCTGTGCAAGGCAAGTTTTGTGATGATTAAGAAAGTCGAGCATGCAGCCACTACGGATCAAAAAGTATACTCCCAGACAATCCCATGTAACAATTCAGCCTCAGAAATTTTTATCCCCATGGATCAAGAATTACCGCATACTACCTTTGAGTCTACACAGACGGGAGCTTGTGTAATTTGCCGTGGTCGGGAACCAGAGGATCTCCTTGAGAATTGTGATATTTGCCAAATTCAAAAAATTCATTCTTATTGCATGGACCCTCCTCTACGGCCATGGACATGCAATCATTGCAAGGAACTTCGGATGCTTTATCGCACTAATCACTATTAG 465 0.4215 MSCVICFTDFSTTRGILPCGHRFCFPCIQSWVDHRTSMRKTSTCPLCKASFVMIKKVEHAATTDQKVYSQTIPCNNSASEIFIPMDQELPHTTFESTQTGACVICRGREPEDLLENCDICQIQKIHSYCMDPPLRPWTCNHCKELRMLYRTNHY 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14320g00001 154 ProSitePatterns Zinc finger RING-type signature. 19 28 IPR017907 -
Vium14320g00001 154 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 153 IPR013083 -
Vium14320g00001 154 Pfam Zinc finger, C3HC4 type (RING finger) 3 47 IPR018957 GO:0046872
Vium14320g00001 154 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 68 IPR013083 -
Vium14320g00001 154 PANTHER F5A8.9 PROTEIN 1 151 - -
Vium14320g00001 154 SUPERFAMILY FYVE/PHD zinc finger 90 145 IPR011011 -
Vium14320g00001 154 ProSiteProfiles Zinc finger RING-type profile. 3 48 IPR001841 -
Vium14320g00001 154 SUPERFAMILY RING/U-box 2 55 - -
Vium14320g00001 154 SMART ring_2 3 47 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14320g00001 Vium-Chr14320 5629 8518 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14320g00001 3 101 C3H Transcription Factor Family AT3G03550 28.972 8.84e-07 45.4