Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1431g00001 ATGGCACCTATGGGTCCCGGTTTTCGATTCCACCGCACCGACGAAGAGCTGGTGGTGTTCTACCTGAACCTGAAGCGCAAGATCACCGGAAACTTGTCCCGATACGACCACATTGCAATGGTTGATGTCTACAAGCTCGAGCCTTGGGACCTTCCCCCTCTGTCGAAGCTTAAGACGAAGGACTTGGAATGGTACTTCTTCAGCGTGATGGACCGCAAGTATGGAAATGGCTCCAAGACCAACCACGCCACCGAGAAGGGGTACTGGAAGACCACTGGAAAGGACCGCCTTGTGGCCCATGGCGACCGCACCGTGGGGATGAAGAAAACCCTCGTGTACCACGCCCCTGCTCTTTCTATCACCGATTGCCACCTCTACCAAGTTCAACTACCACCGATTCCCACCTCTCCTCGGATATTGTCTCTTGTTGTTTGGTCTGGTTGGCCATTGAAGGGTGATCAAGCTTCTATAATTGGAGGTGCTATTAACTTTGTCAAGGAGCTTGAGCAGAGGCATAAGACCAAGATGAAACAGCAATATTACAAGACACAATATTACAACATCCAATGTCAAAATTCTCTCTACAGAAGCAGCAAAATTACATACTCAGAAGCAATATTACAACAACAGAAGAAACTCATAGATGAAACAGAAAGCCAGAGAAGCCAAATTTCTTCCTCTTTGCACATGGTGAAACAGAAAGCCAAGTTTCTCTATTCTTCCCCCAATGGCGTGGTCAGAGGCCCGCCATCCCTCCACCTCCTGCCCCGCTACCCCGACGAAGCCTTCACCGGCTTCTGTCCCGCATGCCTCTGCAAACGCCTCGTCCTCCTCGACCCCAACAACAACAACAACAACAGCCTCGCCACTGCTCGCAAACCTCCATCCACTGCCGTCGTCGCCGCCCTTAAAGCCCTCTTCCGCCCTAGAAACCCTAGAAGAAAAAGGAAACTTATTATGGACCGATTGATCGGTGTAAATCAAAGTTTAACCGGTGGAAAAAGTTTCTAA 1011 0.4995 MAPMGPGFRFHRTDEELVVFYLNLKRKITGNLSRYDHIAMVDVYKLEPWDLPPLSKLKTKDLEWYFFSVMDRKYGNGSKTNHATEKGYWKTTGKDRLVAHGDRTVGMKKTLVYHAPALSITDCHLYQVQLPPIPTSPRILSLVVWSGWPLKGDQASIIGGAINFVKELEQRHKTKMKQQYYKTQYYNIQCQNSLYRSSKITYSEAILQQQKKLIDETESQRSQISSSLHMVKQKAKFLYSSPNGVVRGPPSLHLLPRYPDEAFTGFCPACLCKRLVLLDPNNNNNNSLATARKPPSTAVVAALKALFRPRNPRRKRKLIMDRLIGVNQSLTGGKSF 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1431g00001 336 Gene3D NAC domain 13 135 IPR036093 GO:0003677|GO:0006355
Vium1431g00001 336 Pfam No apical meristem (NAM) protein 6 114 IPR003441 GO:0003677|GO:0006355
Vium1431g00001 336 SUPERFAMILY NAC domain 3 115 IPR036093 GO:0003677|GO:0006355
Vium1431g00001 336 Pfam Protein of unknown function (DUF740) 256 312 IPR008004 -
Vium1431g00001 336 ProSiteProfiles NAC domain profile. 4 146 IPR003441 GO:0003677|GO:0006355
Vium1431g00001 336 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1431g00001 Vium-Chr1431 22851 25583 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1431g00001 4 114 NAC Transcription Factor Family AT5G04410 67.568 1.19e-46 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium1431g00001 NAM 1.3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1431g00001 - - vum:124826397 665.996