Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium142g00014 ATGGTGAATGGAGGGTTGGTGGAAGATGTTGCAGTGATTGGAGGGTTGATAGGGGTGCAATTTGTTTACGCAGGAAACGCTTTGTTGCTCAGTTATCTTATGTCTTTGGGCCTCGAATCTCTTACCATTGTCACTTTTACTTCCTTTGCTACGTTCCTTATTCTCTTACCCTTTGCCTTCTATTATGAAAGGTGTAGATGGCCCACTAAAGTTGGTTTCAAGTTGTTTACACAGCTTTTCTTGCTTGCACTGGGAGGGGTAACAATGTTCCAGTCTCTATTCCTAAAAGGAATCAATCTAACCTCGCCAGCAATGGGAACAGCCATGCCAAATCTTGCACCAGGTCTCATCTTCATCATGGCATGGATTTTTCGGTTGGAAAAAGTAAAGTTAAGCTGCACATATAGTAGAGTAAAAATAGTTGGCACGTTGCTTTGTGTATTAGGAGCTCTCACACTGAGCATAATGCAAAGCATCTCTGCACCTCATAAGTCCAATAAAGTGGGAACAATTCAATCACCATCTCCACCGACACATGTAACATTTGACAGACACAAACTAATCGGTTGTCTCTATCTTTTGGTCGCAATCCTCATATTGTCAAGCAACATTGTCCTACAGGCCTTTACTCTAGGAGATTTTCCTGCACCGATGTCGTTGTGTTCAATAACTTGCTTTTTTGGGACATTCATGACTGTCGCAGTTCAATTAATTGAAGATCACGAATTCAAAACTGGTTGGCCTATTGTGAGTGTCGGAGACATGATTGGATATTCTCTTCTGGCAGGTGTAGTGAGTGGAATGTGCCTGACTGTGAATTGTTGGGCACTTGAGAAAAGAGGGCCAGTGTTGGTGTCCATGTTCAGTCCTATTGGTACAGTCTGCTCAGTAATTTTCTCAGTTGTTACTCTAGGACACACCACCAACATTGGAAGCTTAGCAGGTATGTTCCTGATGTTCACTGGGCTCTACTTTGTGCTTTGGGCCAAAGGGAAAGAAGGTTGCTTTGAGAGTGAATATGACGCAGAGAAGCCCCTTTTAAGTTAA 1047 0.4279 MVNGGLVEDVAVIGGLIGVQFVYAGNALLLSYLMSLGLESLTIVTFTSFATFLILLPFAFYYERCRWPTKVGFKLFTQLFLLALGGVTMFQSLFLKGINLTSPAMGTAMPNLAPGLIFIMAWIFRLEKVKLSCTYSRVKIVGTLLCVLGALTLSIMQSISAPHKSNKVGTIQSPSPPTHVTFDRHKLIGCLYLLVAILILSSNIVLQAFTLGDFPAPMSLCSITCFFGTFMTVAVQLIEDHEFKTGWPIVSVGDMIGYSLLAGVVSGMCLTVNCWALEKRGPVLVSMFSPIGTVCSVIFSVVTLGHTTNIGSLAGMFLMFTGLYFVLWAKGKEGCFESEYDAEKPLLS 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium142g00014 348 Pfam EamA-like transporter family 17 154 IPR000620 GO:0016020
Vium142g00014 348 Pfam EamA-like transporter family 188 327 IPR000620 GO:0016020
Vium142g00014 348 PANTHER WAT1-RELATED PROTEIN 15 334 IPR030184 GO:0016020|GO:0022857
Vium142g00014 348 SUPERFAMILY Multidrug resistance efflux transporter EmrE 251 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium142g00014 Vium-Chr142 48403 51217 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium142g00014 6 339 Nodulin-like Gene Family AT5G47470 56.119 4.57e-132 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium142g00014 - - gmx:100809182 578.941