Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14286g00004 ATGGCACCCTTCATCATCTTCAAGTCCAAGCTTCAATCTAGAGTACTTGTTCTTGTCCTCAACTTGGCTTTCGTCTTCCTCTTCTGTCTACTTCTCAACCTTTATCTCCACCCTCCTAACGAAAATTCTCAAGGCCACTCCAATGCCTCTTTCCTCTCAATCTTCAACCATGCAAGGCTCTTCAGAGATGTCAGCGTTGAAGGCTGCACTGATATACACAAGTATTCAGATTTTGACTCCAAGTGTTTGTATGTCAGAACTAATCTCGAGTGCAGGTCAAAGGGATACATCAACTATCTTCAAATCTTCTACTGCAACTCTGGAAAATTCCCAATTTTTGGACAATCCCTCCTTGCCTTGTGGCTTGTAGTGTTGTTTTATCTGTTGGGTGACACGGCTTCCAACTACTTTTGCAGTTCCTTGGAGGGTTTGTCCAACATCTTGAGGCTCTCCCCCACCATTGCAGGAGTGACCCTTCTTTCTCTGGGAAATGGCGCTCCTGATTTCTTTGCCAGCGTTGTGTCTTTCTCAGGATCATCCAGCAACGGTGCCGTAGGACTCAACAGCATCCTAGGAGGTTCTTTCTTTGTGTCGTGTGTTGTCTTGGGGGTCATAAGCATTCTGGTTAGCCCAAATCAGGTTGAGGTTGAAAAGGCCAGTTTCATCAGGGATGTCCTTTTCTTCCTTCTCTCTCTTTTCATCCTCCTTATCATAATTTACATCGGTAAAATCACTTTGTTTGCTTCAATCTGCTATGTTTCTATCTACTTCCTCTACGTCTGTGCCGTCTCAGCCACACATCTCATATACGGAGGGGACACAACAAATGCAAGGCAATATTCAATGTCTTCTGAGGAATCATCAGCGCCTAGCATACCTTTGTTGGGCTATGTTGATGAAGAGAAACAAAGTTTGGCAGAGATAGTGGTGGTTGAAGATAAGGACCAAAAGCCAGCCAGTACTTTCGGTGATAAGTCATTCTTTGGTTGCCTCTACTTTGGAAAGTTGCTACAAGTGGTAGAACTACCTCTTTGCTTACCAAGAAGGCTTACAATTCCTGTGGTGAGTGAGGAGAAGTGGTCAAAGCCATTTGCAGTAATATCTGTCACATTAGCACCAGTTTTACTTGCAGTTCTTTTCAACACTCAAGGTGAAAACGTGGCTTCAAGGAGTAGCCTGGTTACATACATAGTAGCTGCTTTGATTGGGATAGTTTTGGGCAACATGGCATGCGTGACAACTGATAGGTGTAGCCCACCAACCAAGTCCTTGTTTCCTTGGTTAGCTGGTGGCTTTGCCATGAGTGTAACATGGACTTACATAATTGCTGCCGAGCTAGTTTCTGTCTTGGTTTCAATTGGGAGCATAATTGGGGTTAGCCCTTCAGTGCTAGGACTAACTGTCCTAGCTTGGGGGAACTCACTTGGGGACTTCATAGCCAATGGTGCCATGGCCTTAAATGGTGGGGCAGATGGTGTTCAAATGGCCATATCCGGTTGCTACGCTGGTCCAATGTTCAATACCTTGATGGGTTTGGGGTTACCCCTTGTTCTCTCAGCTTTGTCTGATCATCCAGACCCTTATGTGATTCCCAAGGATCCTTCACTGTATGAGACAATTTTGTTCTTGATGGGAGGGCTTCTTTGGGCACTTGTGATCTTGCCAAAGAAGAGTATGAGGTTGGATAAATCCTTAGGGGTAGGGCTTCTAAGTGTTTACCTCTGTTTTTTGGTTATAAGGATTGCTCTGGCTTTTGGGGTTGTGAAATTCTAG 1773 0.4478 MAPFIIFKSKLQSRVLVLVLNLAFVFLFCLLLNLYLHPPNENSQGHSNASFLSIFNHARLFRDVSVEGCTDIHKYSDFDSKCLYVRTNLECRSKGYINYLQIFYCNSGKFPIFGQSLLALWLVVLFYLLGDTASNYFCSSLEGLSNILRLSPTIAGVTLLSLGNGAPDFFASVVSFSGSSSNGAVGLNSILGGSFFVSCVVLGVISILVSPNQVEVEKASFIRDVLFFLLSLFILLIIIYIGKITLFASICYVSIYFLYVCAVSATHLIYGGDTTNARQYSMSSEESSAPSIPLLGYVDEEKQSLAEIVVVEDKDQKPASTFGDKSFFGCLYFGKLLQVVELPLCLPRRLTIPVVSEEKWSKPFAVISVTLAPVLLAVLFNTQGENVASRSSLVTYIVAALIGIVLGNMACVTTDRCSPPTKSLFPWLAGGFAMSVTWTYIIAAELVSVLVSIGSIIGVSPSVLGLTVLAWGNSLGDFIANGAMALNGGADGVQMAISGCYAGPMFNTLMGLGLPLVLSALSDHPDPYVIPKDPSLYETILFLMGGLLWALVILPKKSMRLDKSLGVGLLSVYLCFLVIRIALAFGVVKF 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14286g00004 590 Pfam Sodium/calcium exchanger protein 428 581 IPR004837 GO:0016020|GO:0055085
Vium14286g00004 590 Pfam Sodium/calcium exchanger protein 119 262 IPR004837 GO:0016020|GO:0055085
Vium14286g00004 590 Gene3D - 363 582 IPR044880 -
Vium14286g00004 590 Gene3D - 150 279 IPR044880 -
Vium14286g00004 590 PANTHER NA+/CA2+ K+ INDEPENDENT EXCHANGER 23 589 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14286g00004 Vium-Chr14286 22183 24476 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14286g00004 77 589 Antiporters AT5G17860 51.830 5.55e-174 502
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14286g00004 K13754 - gmx:100811635 881.708