Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14286g00001 ATGTTCTCCAACACCAAAGTTTCTGTCCCCAAACGCATGGGGTTCAGAGTCAATTTCACTTCGTTCCTGAATATCTCCTTCCTCATGATCGTGTTTTGTGTTTCTCTTATTTCCCACTTCCATTCTTCGGATCATGTTGTTCTGAGGAGAAACCGGTTAGGCTTGAGGGAGGGCGAAAAGGATTGCAAAAGTTTCCACAATTTGAAAGACTCAAAAGCCAAGTGCTTGTACTTGAAATCCAATGATCCGTGTGTTTCTCAGGGTTATGTCGACTACCTTTACATTTTCTATTGCAAAGTGGGGGATTTCCCTCTTTTGGGTCATAGTCTTTTGTTTCTTTGGCTTTTGGTTCTGTTCTACCTGTTGGCCAACACTGCCTCTGACTACTTTTGTCCTTCTCTTGAGCACTTGTCCAAATTGCTGAGGCTCTCTCCCACGATTGCTGGGGTGACTCTTCTCTCTCTTGGAAATGGTGCTAATGACGTTTTTGCCGCCCTTGTCTCTTTCAAGGGTAGTGGGACCCAGGACATTGGTTTCAACACTGTGCTTGGAGGTGCATCCTTTGTTTCCTGTGTTGTGGTTGGAATAGTGAGCATTTCAATCAGGGAAAGGGGGATTCGGGTCAAGAAGTGGGCCTTGGTGAGAGATGTCTGTTTCCTTCTCCTGGTTCTTTTCTGTTTGTTGATCATTTTGATCACTGGTGAAATCAGTGTTCCCGGGGCAATTGGTTTTTGCTTGATGTATGTGGTGTATGTGGTGGTTGTTTATGTCTCATCTAAACGAGGGAATAAAGGTGTATGCGACGATGCTGATACTGAAAGTGATGGTGATTTGAGTCATGGTGGTGGCAATGATTTAGGTGTGCCTTTGCTTATTGGCTTGGAGAAAGGACTTGCAGATACAGGTCAGGAATTTGACGTGAAAATAGGGAGGAAGTGTTGCTGTTTAAAATCTTCAATTTGTAGAATGTTACTTTTTGTCATGGAGATGCCACTTTACTTGCCTAGGAGATTGACAATTCCTGTTGTTTGTGAAGAGAGATGGTCCAAAGGGTATGCAGTTTGTTCAGCGATGCTAGCACCACTTCTACTGTCTTTCTTGTGGGTACCAAACCTGGAAAAAAACTTCAACTCAAGCCTTATTGTTTGTGGAATTGGATTGTTGCTTGGGATTACACTAGGGGTAACAACATTTTTCACAACCAATGTGTCAAGCCCTCCAAGGAAGTACTTGTTTCCTTGGCTTGCAGGAGGATTTGTGATGAGTGTGACTTGGAGCTACATTTCAGCACAAGAATTGGTGGGGTTGCTGGTTTCACTCGGTTACATATGTGGGGTCAGTCCTTCAATCCTGGGGCTAACAGTTCTTGCCTGGGGAAATTCAATTGGGGATTTGGTTACAAATTTGACAATGACTTTGTATGGCGGATCAGAAGGTGCTCAAATTGCAATATCAGGGTGTTATGCTGGTCCTATCTTCAATATAGTGGTTGGATTAGGCTTATCTCTTGTGAACACTACTTGGTCAGAGTATCCATTTTCTGTTGAGATTCCTAAAGATCCATATCTTTGGGAGACATTAGCACTATTGGCAGTTGGATTGGTTTGGGCTCTTGTTGTGTTGATTAGAAGAGATATGAAACTTGATGCAGTATTGGGAGTAGGACTCTTGGTTATTTACTTCATTTCTCTGTTTCTGAGGCTGATTCAGACACTTGGGTCACTCCATTTTCAGAATATGATAAACTCACTCTTCATAACATCATAA 1767 0.4273 MFSNTKVSVPKRMGFRVNFTSFLNISFLMIVFCVSLISHFHSSDHVVLRRNRLGLREGEKDCKSFHNLKDSKAKCLYLKSNDPCVSQGYVDYLYIFYCKVGDFPLLGHSLLFLWLLVLFYLLANTASDYFCPSLEHLSKLLRLSPTIAGVTLLSLGNGANDVFAALVSFKGSGTQDIGFNTVLGGASFVSCVVVGIVSISIRERGIRVKKWALVRDVCFLLLVLFCLLIILITGEISVPGAIGFCLMYVVYVVVVYVSSKRGNKGVCDDADTESDGDLSHGGGNDLGVPLLIGLEKGLADTGQEFDVKIGRKCCCLKSSICRMLLFVMEMPLYLPRRLTIPVVCEERWSKGYAVCSAMLAPLLLSFLWVPNLEKNFNSSLIVCGIGLLLGITLGVTTFFTTNVSSPPRKYLFPWLAGGFVMSVTWSYISAQELVGLLVSLGYICGVSPSILGLTVLAWGNSIGDLVTNLTMTLYGGSEGAQIAISGCYAGPIFNIVVGLGLSLVNTTWSEYPFSVEIPKDPYLWETLALLAVGLVWALVVLIRRDMKLDAVLGVGLLVIYFISLFLRLIQTLGSLHFQNMINSLFITS 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14286g00001 588 Gene3D - 352 568 IPR044880 -
Vium14286g00001 588 Gene3D - 143 268 IPR044880 -
Vium14286g00001 588 Pfam Sodium/calcium exchanger protein 415 567 IPR004837 GO:0016020|GO:0055085
Vium14286g00001 588 Pfam Sodium/calcium exchanger protein 112 256 IPR004837 GO:0016020|GO:0055085
Vium14286g00001 588 PANTHER NA+/CA2+ K+ INDEPENDENT EXCHANGER 318 576 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14286g00001 Vium-Chr14286 890 3276 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14286g00001 15 576 Antiporters AT5G17850 52.014 4.64e-169 490
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14286g00001 K13754 - gmx:100787016 858.211