Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14278g00002 ATGAAGCCATTTAACTTTTTAGTGTTATCTTTGTATTTCTTCTCCGTGGTGGGGCAGCTTCCTTCTCAGGATATTTTAGCATTGCTGGAGTTCAAGAAAGGCATCAAACACGACCCCACTGGCTATGTGCTCAGTTCCTGGAATGAGGAATCCATTGATTTTGATGGATGCCCGTCTTCATGGAATGGAGTTTTGTGCAATGGTGGTAATGTTGCTGGGGTTGTCCTTGATAACTTGGGTCTCTCTGCTGACACAGACTTGAGTGTGTTTTCCAATCTCACCAAGCTTGTGAAACTCTCCATGTCCAACAATTCCATAACAGGAATTCTACATGGCAGCATTGCTGAGTTCAAAAGCCTTGAATTCCTGGATATTTCCAATAACCTCTTTTCCTCATCTTTGCCATTAGAAATTGGTATGTTAAGCAGTCTGCAGAACCTGTCTTTGGCTGGAAATAATTTCTCTGGTCCAATTCCGGACTCAGTGTCAGAAATGGCTTCCATCAAGTCCATGGATTTGAGCCGCAACTCTTTCTCCGGAAAGCTGCCAGTGTCGTTGACCAAGGTGACTAGCCTTGTATCTCTTAACTTGTCTCATAACAGCTTCACTGGAAAAATTCCCAAAGGTTTTGAGCTGATCCCTGCTCTTGAAAATCTTGACTTGCATGGTAATATGCTTGAAGGTAATTTGGATGTTGAATTTATGCTTTTATCGAGTGCCAGCTATGTTGATTTAAGTGAGAACATGCTGTCTAGTTCTGATTCCAAGCAGAAGTTTCTACCGCGACTATCTGAAAGTATTAAGCATCTGAATTTAAGCCACAACAAGCTTACTGGATCATTGGCCAGTGGAGTTGCAGAACCGGTTTTTGAAAACTTGAAAGTGTTAGACCTCAGTTACAATCAGTTGGATGGAGAATTGCCTGGATTTGATTTTGTTTATGATCTCCAGGTCCTCAGGCTTAGCAACAACAGGTTTTCAGGATTTATTCCTAATGGCCTACTGAAAGGAGACTCTTTGGTTTTAACTGAACTGGATTTGAGTGCCAACAATCTCTCTGGGCCACTAAGCATAATTACATCAACAACACTTCATTCTCTTAACCTCTCATCAAATCAGTTCACTGGCGAACTGCCACTGCTGACTGGAAGCTGTGTTGTACTTGATTTGTCAAACAACAAATTAGAGGGAAATTTAACTAGGATGTTGAAATGGGGGAATATAGAATTTCTTGATCTCAGTGGCAATCATTTGATGGGGACCATACCTGAGGAAACTCCTCAATTTTTGCGTCTAAATTATTTGAATTTATCCCATAATTCTCTTAGCAGCTCCCTTCCAAAAGTCTTGACACAGTATCCAAAGCTGATAGTTCTTGACATTAGTTTCAATCAATTAGATGGACGGTTTCTATCTGGTCTGCTCACAATGTCCTCTTTGCAAGAGCTACATCTTGAAAATAACGTGATCTCTGGTTCCATCAATTTCTCATCTTCTCCTGACCAATCCGATCTTCAGATTCTTGATCTTTCTCACAACCAGCTTGATGGCTATTTTCCTGATGAGTTTGGGTCATTAAGTGGCCTTAAAGTGCTAAATATCGCTGGAAATAATTTTTCTGGCTCTCTTCCAACCACCATTGCTGACATGAATTCACTTGACTCAATGGATATATCAGACAATCATTTTACTGGTCCTCTACCAAATAACACGCCAAAGGGGCTCCAAAACTTCAATGCTTCCGGAAATGATCTATCTGGACTCGTCCCAGAAGTTTTTAGGAAGTTTCCTAGTTCTTCTTTCTTTCCTGGTAATTCCAAGTTACATTTTCCAAATGGTCCTCCGGGATCAACTGCACCTGCTGAAGGTTCCAAGAAGAAGCATTTGAACACCATTGTTAAAGTAATAATCATAGTGTCATGTGTGGTTGCATTCTTCATATTAATCCTGCTGGCAGTCTTCATACACTATATACGGATATCAAGATCTCCACCAGAATATGATACAAGTAAGGATATCCACAGGCCTCCTCAACCAATTATCTCGGCTCCTGTTCGAACTACTGATAGGGGTGGTGCTTTGGTTGTTTCAGCTGAGGACCTGGTGGCCACACGCAAAGAGTCACCATCTGAGGTAATCAGCTCTGATGAAAAAATGGCAGCTGTAACGGGGTTCTCTCCATCAAAACAAAGCCACTTTTCATGGTCACCAGAATCTGGTGATTCATTCACTGGTGAAAATCTTGCAAGACTAGATACGAGGTCACCAGATCGGTTGATTGGAGAGCTGCATTTTCTTGATGATTCGATAACATTGACACCAGAGGAGCTCTCGAGGGCCCCAGCTGAAGTTTTGGGAAGAAGTAGTCATGGTACTTCTTACAAGGCCACTCTGGAGAATGGTTTGTTGTTGAGAGTGAAGTGGTTGAGAGAAGGAGTAGCAAAACAGAGAAAAGAATTTGTCAAGGAAACCAAAAAATTTGCCAACATCAGACATCCAAATGTTGTGGGATTGAGAGGATATTATTGGGGCCCTACACAGCACGAGAAGCTCATCCTTTCAGATTACATCTCACCAGGAAGTCTTGCAAGCTTTCTTTATGATCGACCAGGAAGAAAAGGTCCACCTTTAACTTGGATGCAGAGACTCAAAATAGCAGTTGATGTAGCACGTGGCCTGAACTATCTCCATTTTGATCGTGCCGTCCCTCATGGGAACCTCAAAGCCACAAATGTGTTGTTAGACACAACTGATATGAATGCACGTGTCGCCGATTACTGTCTTCACCGGCTCATGACTCAAGCAGGTACTATTGAACAGATTCTCGATGCTGGGGTCTTGGGTTATCGTGCACCCGAGTTAGCTGCCTCCAAGAAGCCAATGCCCTCCTTCAAGTCAGATGTTTATGCTTTTGGAGTTATACTTTTGGAACTTCTAACCGGAAGGTGTGCTGGTGATGTGATATCTAGTGAGGAGGGAGGTGTTGATCTGACAGATTGGGTGAGGTTGCGTGTGGCAGAAGGCAGAGGCTCAGAATGTTTTGATGCTACCTTGATGCCAGAAATGAGCAATCCTGTTGTAGAGAAGGGAATGAAGGAGGTCCTTGGAATAGCCATGCGATGCATTCGATCAGTTTCTGAAAGGCCTGGCATCAAAACTATATATGAAGATCTCTCTTCTATATAG 3186 0.425 MKPFNFLVLSLYFFSVVGQLPSQDILALLEFKKGIKHDPTGYVLSSWNEESIDFDGCPSSWNGVLCNGGNVAGVVLDNLGLSADTDLSVFSNLTKLVKLSMSNNSITGILHGSIAEFKSLEFLDISNNLFSSSLPLEIGMLSSLQNLSLAGNNFSGPIPDSVSEMASIKSMDLSRNSFSGKLPVSLTKVTSLVSLNLSHNSFTGKIPKGFELIPALENLDLHGNMLEGNLDVEFMLLSSASYVDLSENMLSSSDSKQKFLPRLSESIKHLNLSHNKLTGSLASGVAEPVFENLKVLDLSYNQLDGELPGFDFVYDLQVLRLSNNRFSGFIPNGLLKGDSLVLTELDLSANNLSGPLSIITSTTLHSLNLSSNQFTGELPLLTGSCVVLDLSNNKLEGNLTRMLKWGNIEFLDLSGNHLMGTIPEETPQFLRLNYLNLSHNSLSSSLPKVLTQYPKLIVLDISFNQLDGRFLSGLLTMSSLQELHLENNVISGSINFSSSPDQSDLQILDLSHNQLDGYFPDEFGSLSGLKVLNIAGNNFSGSLPTTIADMNSLDSMDISDNHFTGPLPNNTPKGLQNFNASGNDLSGLVPEVFRKFPSSSFFPGNSKLHFPNGPPGSTAPAEGSKKKHLNTIVKVIIIVSCVVAFFILILLAVFIHYIRISRSPPEYDTSKDIHRPPQPIISAPVRTTDRGGALVVSAEDLVATRKESPSEVISSDEKMAAVTGFSPSKQSHFSWSPESGDSFTGENLARLDTRSPDRLIGELHFLDDSITLTPEELSRAPAEVLGRSSHGTSYKATLENGLLLRVKWLREGVAKQRKEFVKETKKFANIRHPNVVGLRGYYWGPTQHEKLILSDYISPGSLASFLYDRPGRKGPPLTWMQRLKIAVDVARGLNYLHFDRAVPHGNLKATNVLLDTTDMNARVADYCLHRLMTQAGTIEQILDAGVLGYRAPELAASKKPMPSFKSDVYAFGVILLELLTGRCAGDVISSEEGGVDLTDWVRLRVAEGRGSECFDATLMPEMSNPVVEKGMKEVLGIAMRCIRSVSERPGIKTIYEDLSSI 1061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14278g00002 1061 SUPERFAMILY L domain-like 46 379 - -
Vium14278g00002 1061 SMART LRR_typ_2 526 549 IPR003591 -
Vium14278g00002 1061 SMART LRR_typ_2 93 116 IPR003591 -
Vium14278g00002 1061 SMART LRR_typ_2 189 212 IPR003591 -
Vium14278g00002 1061 SMART LRR_typ_2 290 312 IPR003591 -
Vium14278g00002 1061 SMART LRR_typ_2 477 500 IPR003591 -
Vium14278g00002 1061 SMART LRR_typ_2 429 452 IPR003591 -
Vium14278g00002 1061 SMART LRR_typ_2 141 165 IPR003591 -
Vium14278g00002 1061 SMART LRR_typ_2 313 337 IPR003591 -
Vium14278g00002 1061 FunFam LRR receptor-like serine/threonine-protein kinase GHR1 20 264 - -
Vium14278g00002 1061 Pfam Leucine rich repeat 505 563 IPR001611 GO:0005515
Vium14278g00002 1061 Pfam Leucine rich repeat 143 201 IPR001611 GO:0005515
Vium14278g00002 1061 Gene3D Transferase(Phosphotransferase) domain 1 858 1061 - -
Vium14278g00002 1061 FunFam Leucine-rich repeat receptor-like protein kinase 764 856 - -
Vium14278g00002 1061 Gene3D Ribonuclease Inhibitor 187 257 IPR032675 -
Vium14278g00002 1061 Pfam Leucine Rich repeat 292 306 IPR001611 GO:0005515
Vium14278g00002 1061 Pfam Leucine Rich repeat 361 377 IPR001611 GO:0005515
Vium14278g00002 1061 Pfam Leucine rich repeat N-terminal domain 22 67 IPR013210 -
Vium14278g00002 1061 SUPERFAMILY Protein kinase-like (PK-like) 782 1058 IPR011009 -
Vium14278g00002 1061 ProSiteProfiles Protein kinase domain profile. 779 1061 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium14278g00002 1061 PANTHER OS07G0626500 PROTEIN 8 1061 - -
Vium14278g00002 1061 ProSiteProfiles Leucine-rich repeat profile. 292 314 IPR001611 GO:0005515
Vium14278g00002 1061 Pfam Protein tyrosine and serine/threonine kinase 783 981 IPR001245 GO:0004672|GO:0006468
Vium14278g00002 1061 FunFam Pollen receptor-like kinase 1 857 1061 - -
Vium14278g00002 1061 SUPERFAMILY L domain-like 385 598 - -
Vium14278g00002 1061 Gene3D Ribonuclease Inhibitor 22 185 IPR032675 -
Vium14278g00002 1061 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 382 614 - -
Vium14278g00002 1061 Gene3D Phosphorylase Kinase; domain 1 772 856 - -
Vium14278g00002 1061 Gene3D Ribonuclease Inhibitor 258 618 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14278g00002 Vium-Chr14278 7843 13320 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14278g00002 9 1009 Receptor kinase-like Gene Family AT4G36180 27.885 1.90e-80 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vium14278g00002 PK_Tyr_Ser-Thr 1.3e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14278g00002 - - gmx:100793639 1918.66