Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1426g00001 ATGCCACTGAACCGTGGCCAAAGGCAAACCACAAGGTGGTATCATCAGCTATGCTTTGTTCCCACTAGTTCAGATAGTTCAGATGACTCCGACGTAGAATCTGTAATCATTACACCAAGTACTACAATTACAACTAGTAGGACATGGCAAGAACTTTCTCCGCCGCTGCCGCTGCCGCCATCACCACCACCACCACCACCAAATCCTGAACCTCAAATGGATTGGCGCTTTCTACCACCACCGCCACCACCAGATTTTGCACGGCCACTGTTGCTGCAACAGCATCAGCTTGATCTCAGTGGGGTTTGGGCTATTCTTAACGAAGAAGTACTGCAGGATAGGCTTCAATCTCCCAATATAAGTCATGTTTTTGAAGGTGATAATAGTGGATGCTCAACGATTGCCATGAATGGCCTTAGCAGGGTAAGAGTATCAGAGACAGATAAACTCTTTCTCTGTCCCATTTGCATGGATGAGTTTAAAGTGTGTGATCAAGCATACCGGTTACCCTGCACCCACACCTATTGTTCCGAATGCATTCTTCGTTGGCTTAACAGCAGCAAAACATGTCCAGTTTGCAGGCTTCAATTGAATAATAATAATAATTTGAACTCGCATGTTGAATTTCTATCAACATCATTGTCTTCAACACCATCACCATACTTTCGTTCTCCTCTGCGCCCGGAGTACCTCGTAGAATCTTCTCTCTACCCTACAGCTGGTGTAGAGAACAGTGCAAGTGGTAACTCAGATGAAGCTGATTATGATAGTGCATGTGATGAGCTTGGTGATTCTCAAGAAGATGGTGCTTCTCATACTGCTAATGATTTATGA 834 0.4472 MPLNRGQRQTTRWYHQLCFVPTSSDSSDDSDVESVIITPSTTITTSRTWQELSPPLPLPPSPPPPPPNPEPQMDWRFLPPPPPPDFARPLLLQQHQLDLSGVWAILNEEVLQDRLQSPNISHVFEGDNSGCSTIAMNGLSRVRVSETDKLFLCPICMDEFKVCDQAYRLPCTHTYCSECILRWLNSSKTCPVCRLQLNNNNNLNSHVEFLSTSLSSTPSPYFRSPLRPEYLVESSLYPTAGVENSASGNSDEADYDSACDELGDSQEDGASHTANDL 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1426g00001 277 SMART ring_2 153 193 IPR001841 -
Vium1426g00001 277 SUPERFAMILY RING/U-box 152 200 - -
Vium1426g00001 277 ProSitePatterns Zinc finger RING-type signature. 171 180 IPR017907 -
Vium1426g00001 277 ProSiteProfiles Zinc finger RING-type profile. 153 194 IPR001841 -
Vium1426g00001 277 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 132 197 - -
Vium1426g00001 277 MobiDBLite consensus disorder prediction 242 277 - -
Vium1426g00001 277 MobiDBLite consensus disorder prediction 53 78 - -
Vium1426g00001 277 MobiDBLite consensus disorder prediction 39 78 - -
Vium1426g00001 277 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 222 IPR013083 -
Vium1426g00001 277 Pfam Ring finger domain 153 194 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1426g00001 Vium-Chr1426 56747 57580 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1426g00001 139 197 C3H Transcription Factor Family AT3G02340 45.000 5.31e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1426g00001 - K11982 vum:124826385 499.975