Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14261g00001 ATGGCCGCAACAACAGCAACATCACTCACTCTTTCAAAACCTTCTTCTCTGCCATTCAATCATACCCATGCTTTTCCTAAAACGCCCTCAACACTTCCCACTCTCCTTCGTTCCGCCGTCAAACCTCTCTTCCTCGTATCCTCCAAAAACCCCCTTTCCGATGTTATCTCTTTGCCCGCCGCAGAAGACAGCGCGTGGGATGATGAGAAGCCTCGCGAGGAGTGCGGCGTCGTAGGCATCTACGGCGACCCGGAGGCCTCCCGTCTCTGCTACCTCGCCCTTCACGCGCTCCAGCACCGCGGCCAGGAAGGTGCCGGAATCGTAACCGTTCACAACGACGTCCTCCAATCCATCACCGGCGTGGGCCTCGTCTCCGACGTCTTCAACGAGTCCAAGCTTGACCAGCTCCCCGGCAGCCTCGCCATCGGCCACGTCCGTTACTCCACCGCCGGTCAGTCCATGCTAAAAAACGTCCAGCCTTTCGTCGCTGGTTACAGATTCGGCTCCGTTGGGGTCGCGCATAACGGTAACCTCGTCAACTACCGCGCTCTTCGGTCCGACCTCGAGGACTCTGGCTCCATCTTCAACACCACCTCTGACACCGAGGTCGTCCTCCACCTCATCGCCACCTCCAAGCACCGCCCCTTCATCCTCCGCATCGTTGACGCCTGCGAGAAGGTGAAGGGCGCCTACTCCCTCGTCTTTGTTACCGAGGACAAACTGGTGGCCGTTCGTGATCCCTTCGGGTTCCGTCCCCTCGTCATGGGGAGGAGAAGCAACGGCGCTGTCGTCTTCGCCTCCGAAACCTGCGCGCTTGATTTGATCGAAGCGACGTACGAGAGGGAGGTTTTTCCGGGCGAGGTTCTCGTGGTGGATAAAAACGGTGTTCAGAGTCTCTGCCTAATGTCCCATCCTCAACCCAAGCAATGCATTTTCGAGCATATCTACTTCGCGCTTCCGAATTCGGTTGTTTTCGGGAGGTCTGTGTACGAGTCCCGCAGAAGATTCGGGGAGATTTTAGCCACTGAGAGTCCCGTGGACTGCGATGTTGTGATTGCTGTTCCTGATTCTGGGGTTGTGGCTGCTCTTGGGTATGCTGCAAAAGCTGGGGTTCCCTTTCAGCAGGGTTTGATCAGGTCACACTATGTTGGGAGGACTTTCATTGAGCCCTCTCAGAAGATTAGGGACTTTGGTGTGAAGCTGAAGCTATCACCGGTGCGTGCTGTGCTTGAGGGTAAACGTGTGGTGGTTGTGGATGATTCCATTGTGAGAGGAACCACCTCGTCCAAGATTGTTAGGTTGTTGAAGGAAGCTGGTGCCAAGGAGGTTCACATGAGGATTGCTAGTCCTCCCATTATTGGGTCTTGTTACTATGGGGTTGATACTCCCAGTACAGAAGAGTTGATTTCTAATAGAATGAGTGTGGAAGAGATAAGGAACTTCATTGGGTCGGATTCACTGGCCTTTTTGCCCTTTGATAGCTTGCAGAAGTTGCTGGGGAGTGAAAGCCCTAATTTCTGCTATGCTTGCTTCTCTGGGAATTACCCTGTTGAGCCTACAGAGCTCAAGGTGAAGAAGGTTGGGGACTTTGTTGATGATGGCTTGAATGGGAGCTTGGACTCTATTGGTGGTGGTTGGGTTCAAGCAAACCGAAAGCAAATAGAGATTGGTAGTTAG 1677 0.5385 MAATTATSLTLSKPSSLPFNHTHAFPKTPSTLPTLLRSAVKPLFLVSSKNPLSDVISLPAAEDSAWDDEKPREECGVVGIYGDPEASRLCYLALHALQHRGQEGAGIVTVHNDVLQSITGVGLVSDVFNESKLDQLPGSLAIGHVRYSTAGQSMLKNVQPFVAGYRFGSVGVAHNGNLVNYRALRSDLEDSGSIFNTTSDTEVVLHLIATSKHRPFILRIVDACEKVKGAYSLVFVTEDKLVAVRDPFGFRPLVMGRRSNGAVVFASETCALDLIEATYEREVFPGEVLVVDKNGVQSLCLMSHPQPKQCIFEHIYFALPNSVVFGRSVYESRRRFGEILATESPVDCDVVIAVPDSGVVAALGYAAKAGVPFQQGLIRSHYVGRTFIEPSQKIRDFGVKLKLSPVRAVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIGSCYYGVDTPSTEELISNRMSVEEIRNFIGSDSLAFLPFDSLQKLLGSESPNFCYACFSGNYPVEPTELKVKKVGDFVDDGLNGSLDSIGGGWVQANRKQIEIGS 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14261g00001 558 PIRSF Pur1 71 529 IPR005854 GO:0004044|GO:0009113
Vium14261g00001 558 Gene3D - 334 498 IPR029057 -
Vium14261g00001 558 CDD PRTases_typeI 337 448 IPR000836 -
Vium14261g00001 558 Hamap Amidophosphoribosyltransferase [purF]. 74 515 IPR005854 GO:0004044|GO:0009113
Vium14261g00001 558 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 75 516 IPR029055 -
Vium14261g00001 558 Pfam Phosphoribosyl transferase domain 349 444 IPR000836 -
Vium14261g00001 558 Pfam Glutamine amidotransferase domain 153 272 IPR017932 -
Vium14261g00001 558 PANTHER AMIDOPHOSPHORIBOSYLTRANSFERASE 73 522 - -
Vium14261g00001 558 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 75 294 IPR017932 -
Vium14261g00001 558 NCBIfam amidophosphoribosyltransferase 75 516 IPR005854 GO:0004044|GO:0009113
Vium14261g00001 558 CDD GPATase_N 75 325 IPR035584 -
Vium14261g00001 558 SUPERFAMILY PRTase-like 310 521 IPR029057 -
Vium14261g00001 558 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 75 298 IPR029055 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14261g00001 Vium-Chr14261 1138 3396 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14261g00001 52 548 PRT Gene Family AT4G34740 83.936 0.0 857
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14261g00001 K00764 - gmx:100801720 986.097