Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1423g00008 ATGGCCCACAGGCGTTGCCTCTTGATAAGAGGGAACCTCATGAATCAAAAGTGCCACCCGTCTTTCAGTTATGTTCTCCACAGTGATGAAGAGAAACATGAAAGCACTGGCGAAAGGTCATCTTCAGCAGGGATTAGTAATTTTTTCCAAAGAAGGATGTTTGGGAACTCAGTGGATGGATCAATGTGGTGTTTTGCCTATTCTGAACATAGAATGTCTTCGAACAGATTCCTTTCTCCGAGCTCTGGGTATAATTTATATCGACATATGTCAACAACTAATCAGGGTTCCGATAAGATTGAAATAATGACTGACATAGCAGATGTTCTAAAAAACAATACGATGGAAGCTGTGAATTCTCAGGCACCTATTCTTAAAGAAGTTGCAATTGCCTCTGCTGATTCTGTTTTACCTGTGAAGGCCTTGCAGTACATTATAGATGCCATGCATTCCTACACTGGATTGAACTGGTGGGCAGCCATAGTTATAACAACTCTCTTGATTCGAAGTGCAACAGTTCCACTCTTAATAAATCAACTTAAGGCCACTTCTAAGCTTACGCTGATGAGGCCTCACATGGAAAAAATAAAGGAAGAGATGGAAGATAAGGCTATGGATCCCATTGCTGTTGCTGAAGGTCAGAAAAAAATGAAGATGCTATTTAAGGAATATGGTGCAAGTCCATTTACTCCATTGAAGGGGCTCTTTATTCAAGGTCCTGTCTTTATTAGTTTCTTCCTTGCGATAAGAAACATGGCTGAAAAGATGCCATCATTCAAGGATGGCGGAGCCTACTGGTTTGTTGATCTTACCACTCCAGATGCATTGTACATTTTGCCAGTTCTGACTGCATTGACGTTCTTAATAACAGTAGAGTGCAACATGCAAGAAGGCATGGAAGGAAATCCAGCTGCTGGCACCATGAAAAAAGTCTCGAGGGTTCTTGCTGTCCTTACAGTTCCTTTTACCATGGGATTTCCGAAGGCTATATTTTGTTACTGGATTACATCAAATTTGTTTTCACTTGGATATGGACTCGTTCTTAAAGCTCCTGGTGTAAAGAAAGCTTTGGGTATCCCCATAATACCGGAAGCAGCAGCCACCAGTGGTGCACAATCTCCCTCTTCTATATTTCCAGCCCTGAAACAAGCTACAGCAGCAAGAATTGCACCAAAGTCATTGCCTGTTGAACCATCAAAACATATTACAAACACATCTTCTGATGTCAATCAGAGACTAAATCGTTTAGAGAAACAAGTGAAAAGAAGAAAGAAAAACAAGAAATGA 1287 0.4087 MAHRRCLLIRGNLMNQKCHPSFSYVLHSDEEKHESTGERSSSAGISNFFQRRMFGNSVDGSMWCFAYSEHRMSSNRFLSPSSGYNLYRHMSTTNQGSDKIEIMTDIADVLKNNTMEAVNSQAPILKEVAIASADSVLPVKALQYIIDAMHSYTGLNWWAAIVITTLLIRSATVPLLINQLKATSKLTLMRPHMEKIKEEMEDKAMDPIAVAEGQKKMKMLFKEYGASPFTPLKGLFIQGPVFISFFLAIRNMAEKMPSFKDGGAYWFVDLTTPDALYILPVLTALTFLITVECNMQEGMEGNPAAGTMKKVSRVLAVLTVPFTMGFPKAIFCYWITSNLFSLGYGLVLKAPGVKKALGIPIIPEAAATSGAQSPSSIFPALKQATAARIAPKSLPVEPSKHITNTSSDVNQRLNRLEKQVKRRKKNKK 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1423g00008 428 PANTHER OXA1 114 403 IPR001708 GO:0016020|GO:0032977
Vium1423g00008 428 Pfam 60Kd inner membrane protein 157 347 IPR028055 -
Vium1423g00008 428 MobiDBLite consensus disorder prediction 398 413 - -
Vium1423g00008 428 CDD 5TM_Oxa1-like 154 351 - -
Vium1423g00008 428 NCBIfam membrane protein insertase YidC 156 345 IPR028055 -
Vium1423g00008 428 Coils Coil 406 426 - -
Vium1423g00008 428 MobiDBLite consensus disorder prediction 392 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1423g00008 Vium-Chr1423 38834 50327 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1423g00008 160 427 Chloroplast and Mitochondria Gene Families AT2G28800 23.741 1.62e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1423g00008 K03217 - gmx:100787806 696.812