Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1422g00015 ATGGACGGAAAACGTAAAACAGAAGCCACAAATTTGGATCCTGCATCTTCACATAGGACAGTCACTGAGCCTAGAATCATTGTGCAAACAACCAGTGAAGTTGATCTTTTAGATGATGGTTACAGATGGCGAAAATATGGGCAGAAAGTTGTCAAAGGAAACCCTTATCCGAGGAGCTATTACAAATGTACAACACCAGGTTGTAAAGTCCGAAAGCATGTTGAGAGGGCTTCAACAGATCCTAAAGCTGTCATAACAACATATGAAGGAAAACACAATCATGATGTTCCAGCTGCTAAGACCAGCAGCCATGTTATGGCAAGTAACAACACTGCACAGATAAAATCACAGAATTCCAATCATGGAAAACAAAGTATTGGCAGCAGAGATATTGGAGGCAATGAGCAACAGCCGGTTGCACGGCTAAGGTTGAAGGAAGAGCAGATAACCTAG 453 0.4216 MDGKRKTEATNLDPASSHRTVTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCKVRKHVERASTDPKAVITTYEGKHNHDVPAAKTSSHVMASNNTAQIKSQNSNHGKQSIGSRDIGGNEQQPVARLRLKEEQIT 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1422g00015 150 FunFam WRKY transcription factor 33 24 90 - -
Vium1422g00015 150 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 11 121 IPR044810 GO:0003700
Vium1422g00015 150 SUPERFAMILY WRKY DNA-binding domain 29 97 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium1422g00015 150 MobiDBLite consensus disorder prediction 1 22 - -
Vium1422g00015 150 ProSiteProfiles WRKY domain profile. 32 97 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium1422g00015 150 MobiDBLite consensus disorder prediction 113 132 - -
Vium1422g00015 150 SMART WRKY_cls 37 96 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium1422g00015 150 Pfam WRKY DNA -binding domain 38 95 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium1422g00015 150 Gene3D WRKY domain 22 98 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium1422g00015 150 MobiDBLite consensus disorder prediction 113 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1422g00015 Vium-Chr1422 134148 135398 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1422g00015 4 150 WRKY Transcription Factor Family AT2G03340 73.649 6.85e-70 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium1422g00015 WRKY 1.8e-26 CL0274