Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1422g00006 ATGGAAGAGGTAGAGGAGTGCACCAATGCTAACCAAAAATTCACCACCAGAAGAATGAGCTTCAGGAATGGAGTCAACTCTCATCAGCATCACCGTTACCACCACCACCATCATCACTTTCAACACCATTATCATCTGCAACAACTTCCTTTGACTCCACCCTTCCCTCAAAATCAGATCGTTAAATCAAAAACCCATTTTCACAAACCTCCATGCAAACTCAGTAGCTCCCCCTCCTCGTGTTACAAGCTCGCTCCACCACCACTTGCTCCTGCTCGAAAGGAAGTTGAGCAGCAAACAAAGACATCCCTGAAAGGAGATGATGGGAAGAAACTAATTCCAGAAAGGAAGGCACAGTCAGTGATGGTTGCAAGGAGGCCTGACTCTGGTGGCCAAGAAGGCACTGTCATCTCTCTTCTTGCCAACCACTTTTTGGTACAATTTGATCCATCACAGAAGATATATCATTACAATGTTGAAATCACTCCCCATCCCTCCAAGGATATTGCCAGAGAAATCAAGCACAAGTTGGTAAATAACAATTCTCCTGTCCTCTCAGGTGCTATTCCAGCATATGATGGCAGAAAGAATCTTTACAGTCCAGTTCAGTTCCAAAATGATAAGCTAGAGTTCTACATAAGTCTTCCAATCCCCACTACCAAGCTTCCATCACCTTATGGAGAAATCTCTCATTTTAATGACAAGCATCAAAAGCTTAAACTTTTCAGGATAAATATCAAGTTGGTCTCCAAAATCAATGGGAAGGAGTTGAATAACTACTTGAGCAAAGAGGGTGATGACTGGATTCCACTTCCACAGGATTATCTGCATGCTTTGGATGTAGTTCTTAGGGAGAGCCCTACCGAGAAATGCATTCCTGTTGGAAGGTCATTCTACTCGAGTTCAATGGGAAGAAGCAAAGACATTGGTGGAGGAGCTGTTGGATTGAGAGGCTTCTTTCAGAGTCTCAGACCAACACAACAAGGATTGGCTCTCAATGTGGATTTCTCAGTAACTGCTTTCCATGAGAGCATAGGAGTCATTTCATACCTGCAGAAACGTCTTGAGTTCCTTCGAGACCTTTCTCAAAGGAAGACAGCTCAATTAACTGCTGAAGAAAGGAAGGAAGTTGAGAAGGCATTGAAGAACATCAGGGTCTTTGTTTGCCATAGGGAAACTGTTCAAAGATACCGTGTCTGTGGCTTAACTGAGGAGGCTACCGAAAACCTTTGGTTTTCTGACAGAGATGGCAAGAATCTGAGGCTGCTCGATTACTTTAAAGATCACTATAACTATGACATACAATTCCGAAAATTGCCATGCTTGCAAATTAGTAGGAGTAAACCTTGTTATCTTCCTATGGAGCTTTGTGTGATCTGTGAAGGCCAGAAGTTCCTTGGAAAACTCACTGATGATCAAACGGCAAGAATACTCAAGATGGGCTGCCAAAGACCGGGAGAACGAAAAACCATTATTGAAGGAGTCATGAGAGGAAATGTTGGGCCTACCAGTGGTGATCAGGAAAAAGAATTCAAGCTCCAAGTGTCAAGAGAAATGACAGAGTTGACTGGCAGAATTCTTTTCCCTCCCAAACTAAAGCTTGGAGATGGAGGTCATGTGAGAAACTTGACTCCTTCGCGTCATGACCGGCAATGGAACCTTCTTGATGGCCATGTCTCCGAAGGAACTACTATTGAAAGGTGGGCACTGATTAGTTTTGGGGGCACACCTGAGCAGAAGTCCAGTGTCCCCAGATTCATAAACCAGTTATCTCAAAGGTGTGAACAGTTGGGCATTTTTCTCAACAAGAACACAGTTATTAGTCCCCAGTTTGAATCAAGCCAGATTCTTAACAATGTCACCCTTTTGGAATCTAAGCTCAAGAGGATCCAGAGGACTGCCTCAAACAATCTCCAACTTCTTATTTGCATAATGGAGAGAAAACACAAAGGGTATGCAGACTTGAAACGAATTGCCGAGACCAGTGTTGGTGTTGTGAGCCAATGCTGCCTGTACCCCAATCTCAGCAAGTTGAGTTCACAATTTCTGGCTAATTTGGCCCTCAAAATTAACGCCAAAGTTGGTGGTTGCACGGTTGCTTTGTACAACTCATTGCCTTCACAGTTACCACGTCTCTTTCATATTGATGAGCCAGTGATATTCATGGGTGCAGATGTGACACATCCTCACCCTCTTGATGATTTCAGTCCATCTGTTGCTGCTGTTGTCGGTAGCATGAATTGGCCGACAGCAAACAAATACATTTCAAGAATAAGGTCTCAAACACACAGACAAGAAATCATTCAGGATCTTGGTGCAATGGTGGGGGAACTGCTCGATGATTTTTATCAGGAGGTAGAGAAACTCCCCAGCAGAATTATTTTCTTCAGAGATGGGGTCAGTGAAACTCAGTTTTACAAAGTGTTGGAAGACGAACTTCAGTCAATTAGGTGTGCATGCACAAGGTTTCCAGGTTACAAACCTTCCATTACTTTTGCAGTTGTGCAAAAGAGGCATCACACAAGGTTGTTTCCCCTTGAAACTGACCAGTCTTCAACTCAAAACCATTTTCTATATGAAAACATTCCTCCAGGGACTGTGGTTGATTCAGTGATCACTCATCCAAATGAATTTGATTTCTACCTTTGTAGCCATTGGGGTGTGAAAGGAACAAGTAGGCCAACTCACTACCATGTCTTGTGGGATGAAAACCAGTTTACTTCTGATGAACTGCAGAAACTGGTTTACAACTTGTGCTACACTTTTGTCAGGTGCACCAAGCCAATTTCTTTGGTGCCTCCAGCATACTACGCCCATTTAGCTGCATACAGAGGCAGACTCTACCTCCAAAGATCAGAGTCCTTAGGTTTGTTCAGAAGTACATCTACACTATCCAGAGCTGCTCCTCCAAAGACAGCACCTCTTCCTAAACTTAGTGAAAACATCAAAAAGCTCATGTTCTACTGCTAG 2970 0.4337 MEEVEECTNANQKFTTRRMSFRNGVNSHQHHRYHHHHHHFQHHYHLQQLPLTPPFPQNQIVKSKTHFHKPPCKLSSSPSSCYKLAPPPLAPARKEVEQQTKTSLKGDDGKKLIPERKAQSVMVARRPDSGGQEGTVISLLANHFLVQFDPSQKIYHYNVEITPHPSKDIAREIKHKLVNNNSPVLSGAIPAYDGRKNLYSPVQFQNDKLEFYISLPIPTTKLPSPYGEISHFNDKHQKLKLFRINIKLVSKINGKELNNYLSKEGDDWIPLPQDYLHALDVVLRESPTEKCIPVGRSFYSSSMGRSKDIGGGAVGLRGFFQSLRPTQQGLALNVDFSVTAFHESIGVISYLQKRLEFLRDLSQRKTAQLTAEERKEVEKALKNIRVFVCHRETVQRYRVCGLTEEATENLWFSDRDGKNLRLLDYFKDHYNYDIQFRKLPCLQISRSKPCYLPMELCVICEGQKFLGKLTDDQTARILKMGCQRPGERKTIIEGVMRGNVGPTSGDQEKEFKLQVSREMTELTGRILFPPKLKLGDGGHVRNLTPSRHDRQWNLLDGHVSEGTTIERWALISFGGTPEQKSSVPRFINQLSQRCEQLGIFLNKNTVISPQFESSQILNNVTLLESKLKRIQRTASNNLQLLICIMERKHKGYADLKRIAETSVGVVSQCCLYPNLSKLSSQFLANLALKINAKVGGCTVALYNSLPSQLPRLFHIDEPVIFMGADVTHPHPLDDFSPSVAAVVGSMNWPTANKYISRIRSQTHRQEIIQDLGAMVGELLDDFYQEVEKLPSRIIFFRDGVSETQFYKVLEDELQSIRCACTRFPGYKPSITFAVVQKRHHTRLFPLETDQSSTQNHFLYENIPPGTVVDSVITHPNEFDFYLCSHWGVKGTSRPTHYHVLWDENQFTSDELQKLVYNLCYTFVRCTKPISLVPPAYYAHLAAYRGRLYLQRSESLGLFRSTSTLSRAAPPKTAPLPKLSENIKKLMFYC 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1422g00006 989 CDD PAZ_argonaute_like 355 460 - -
Vium1422g00006 989 Pfam PAZ domain 355 477 IPR003100 GO:0005515
Vium1422g00006 989 FunFam protein argonaute 10-like 711 989 - -
Vium1422g00006 989 Gene3D - 712 989 IPR036397 GO:0003676
Vium1422g00006 989 Pfam N-terminal domain of argonaute 137 283 IPR032474 -
Vium1422g00006 989 ProSiteProfiles Piwi domain profile. 640 950 IPR003165 GO:0003676
Vium1422g00006 989 MobiDBLite consensus disorder prediction 98 114 - -
Vium1422g00006 989 FunFam Argonaute 10 526 702 - -
Vium1422g00006 989 Pfam Piwi domain 641 947 IPR003165 GO:0003676
Vium1422g00006 989 CDD Piwi_ago-like 509 949 IPR045246 -
Vium1422g00006 989 SUPERFAMILY Ribonuclease H-like 625 948 IPR012337 -
Vium1422g00006 989 SMART PAZ_2_a_3 352 483 IPR003100 GO:0005515
Vium1422g00006 989 Gene3D - 526 702 - -
Vium1422g00006 989 Gene3D paz domain 338 465 - -
Vium1422g00006 989 SUPERFAMILY PAZ domain 339 497 IPR036085 GO:0005515
Vium1422g00006 989 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 115 952 - -
Vium1422g00006 989 SMART DUF1785_2 292 344 IPR014811 -
Vium1422g00006 989 MobiDBLite consensus disorder prediction 86 114 - -
Vium1422g00006 989 ProSiteProfiles PAZ domain profile. 352 461 IPR003100 GO:0005515
Vium1422g00006 989 SMART Piwi_a_2 640 950 IPR003165 GO:0003676
Vium1422g00006 989 FunFam Protein argonaute 7 339 465 - -
Vium1422g00006 989 Pfam Argonaute linker 1 domain 293 342 IPR014811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1422g00006 Vium-Chr1422 47771 55139 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1422g00006 131 989 Eukaryotic Initiation Factors Gene Family AT1G48410 41.518 0.0 635