Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1422g00005 ATGATGAACCATGTTGTTTGTTACACTGACTCAGCACGAAAGGAAGTTGAGCAGCAATCAAAGGCATCCCTGAAAGGAGATGATGGGAAGAAAGTAATTCCAGAAAGGAAGACACAGTCAGTGATTGTTGCAAGGAGGCCAGACTCCGGTGGCAGAGAAGGCACTGTCATATCTCTTCTTGCCAACCACTTTTTGGTACAATTTGATCCATCACAGAAGATATATCATTACAATGTTGAAATCTCACCCAATCCCTCCAAGGATATTGCCAGAGCAATCAAGCACAAATTGGTAAATAACAATTCTCCTGTCCTCTCAGGTGCTACTCCGGCATATGATGGCAGAAAGAATCTTTACAGTCCAGTTCAGTTCCAAAATGATAAGCTAGAATTCTACATAAGCCTTCCAGTCCCCACTTCCAAGCTTCCATCACCTTACGGAGAAATCCCTGACTTGAAAGAGAAGCATCAAAAACTTAAACTTTTCAGAATAAATATCAAGTTGGTCTCGAAAATCAATGGGAAGGAGTTGAATAACTACTTGAGCAAAGAGGGTGATGACTGGATTCCACTTCCACAGGATTATCTGCATGCTTTGGATGTAGTTCTTAGGGAGAGCCCTACTGAGAAATGCATTCCTGTTGGAAGGTCATTCTATTCGAGTTCAATGGGAAGAAGCAAAGACATTGGTGGAGGAGCTGTTGGATTGAGAGGCTTCTTTCAGAGTCTCAGACCAACACAACAAGGATTGGCTCTCAATGTGGATTTCTCTGTAACTGCTTTCCATGAGAGCATAGGAGTCATTTCATACCTGCAGAAACGTCTTGAGTTCCTTCGAGACCTTTCTCAAAGGAAGACAGCTCAATTAACTGCTGAAGAAAGGAAGGAAGTTGAGAAGGCATTGAAGAACATCAGGGTCTTTGTTTGCCATAGGGAAACTGTTCAAAGATACCGTGTCTGTGGCTTAACTGAGGAGGCTACCGAAAACCTTTGGTTTTCTGACAGAGATGGCAAGAATCTGAGGCTGCTCGATTACTTTAAAGATCACTATAACTATGACATACAATTCCGAAAATTGCCATGCTTGCAAATTAGTAGGAGTAAACCTTGTTATCTTCCTATGGAGCTTTGTGTGATCTGTGAAGGCCAGAAGTTCCTTGGAAAACTCACTGATGATCAAACGGCAAGAATACTCAAGATGGGCTGCCAAAGACCGGGAGAACGAAAAACCATTATTGAAGGAGTCATGAGAGGAAATGTTGGGCCTACCAGTGGTGATCAGGAAAAAGAATTCAAGCTCCAAGTGTCAAGAGAAATGACAGAGTTGACTGGCAGAATTCTTTTCCCTCCCAAACTAAAGCTTGGAGATGGAGGTCATGTGAGAAACTTGACTCCTTCGCGTCATGACCGGCAATGGAACCTTCTTGATGGCCATGTCTCCGAAGGAACTACTATTGAAAGGTGGGCACTGATTAGTTTTGGGGGCACACCTGAGCAGAAGTCCAGTGTCCCCAGATTCATAAACCAGTTATCTCAAAGGTGTGAACAGTTGGGCATTTTTCTCAACAAGAACACAGTTATTAGTCCCCAGTTTGAATCAAGCCAGATTCTTAACAATGTCACCCTTTTGGAATCTAAGCTCAAGAGGATCCAGAGGACTGCCTCAAACAATCTCCAACTTCTTATTTGCATAATGGAGAGAAAACACAAAGGGTATGCAGACTTGAAACGAATTGCCGAGACCAGTGTTGGTGTTGTGAGCCAATGCTGCCTGTACCCCAATCTCAGCAAGTTGAGTTCACAATTTCTGGCTAATTTGGCCCTCAAAATTAACGCCAAAGTTGGTGGTTGCACGGTTGCTTTGTACAACTCATTGCCTTCACAGTTACCACGTCTCTTTCATATTGATGAGCCAGTGATATTCATGGGTGCAGATGTGACACATCCTCACCCTCTTGATGATTTCAGTCCATCTGTTGCTGCTGTTGTCGGTAGCATGAATTGGCCGACAGCAAACAAATACATTTCAAGAATAAGGTCTCAAACACACAGACAAGAAATCATTCAGGATCTTGGTGCAATGGTGGGGGAACTGCTCGATGATTTTTATCAGGAGGTAGAGAAACTCCCCAGCAGAATTATTTTCTTCAGAGATGTGGTCAGTGAAACTCAGTTTTACAAAGTGTTGGAAGACGAACTTCAGTCAATTAGGTGTGCATGCACAAGGTTTCCAGGTTACAAACCTTCCATTACTTTTGCAGTTGTGCAAAAGAGGCATCACACAAGGTTGTTTCCCCTTGAAACTTACCAGTCTTCAACTCATAACCATTTTCTATATGAAAACATTCCTCCAGGGACTGTGGTTGATTCAGTGATCACTCATCCAAATGAATTTGATTTCTACCTTTGTAGCCATTGGGGTGTGAAAGGAACAAGTAGGCCAACTCACTACCATGTCTTGTGGGATGAAAACCAGTTTACTTCTGATGAACTGCAGAAACTGGTTTACAACTTGTGCTACACTTTTGTCAGGTGCACCAAGCCAATTTCTTTGGTGCCTCCAGCATACTACGCCCATTTAGCTGCTTACAGAGGCAGACTCTACCTCCAAAGATCAGAGTCCTTAGGTTTGTTCAGAAGTACATCTACACTATCCAGAGCTGCTCCTCCAAAGACAGCACCTCTTCCTAAACTTAGTGAAAACATCAAAAAGCTCATGTTCTACTGCTAG 2730 0.4297 MMNHVVCYTDSARKEVEQQSKASLKGDDGKKVIPERKTQSVIVARRPDSGGREGTVISLLANHFLVQFDPSQKIYHYNVEISPNPSKDIARAIKHKLVNNNSPVLSGATPAYDGRKNLYSPVQFQNDKLEFYISLPVPTSKLPSPYGEIPDLKEKHQKLKLFRINIKLVSKINGKELNNYLSKEGDDWIPLPQDYLHALDVVLRESPTEKCIPVGRSFYSSSMGRSKDIGGGAVGLRGFFQSLRPTQQGLALNVDFSVTAFHESIGVISYLQKRLEFLRDLSQRKTAQLTAEERKEVEKALKNIRVFVCHRETVQRYRVCGLTEEATENLWFSDRDGKNLRLLDYFKDHYNYDIQFRKLPCLQISRSKPCYLPMELCVICEGQKFLGKLTDDQTARILKMGCQRPGERKTIIEGVMRGNVGPTSGDQEKEFKLQVSREMTELTGRILFPPKLKLGDGGHVRNLTPSRHDRQWNLLDGHVSEGTTIERWALISFGGTPEQKSSVPRFINQLSQRCEQLGIFLNKNTVISPQFESSQILNNVTLLESKLKRIQRTASNNLQLLICIMERKHKGYADLKRIAETSVGVVSQCCLYPNLSKLSSQFLANLALKINAKVGGCTVALYNSLPSQLPRLFHIDEPVIFMGADVTHPHPLDDFSPSVAAVVGSMNWPTANKYISRIRSQTHRQEIIQDLGAMVGELLDDFYQEVEKLPSRIIFFRDVVSETQFYKVLEDELQSIRCACTRFPGYKPSITFAVVQKRHHTRLFPLETYQSSTHNHFLYENIPPGTVVDSVITHPNEFDFYLCSHWGVKGTSRPTHYHVLWDENQFTSDELQKLVYNLCYTFVRCTKPISLVPPAYYAHLAAYRGRLYLQRSESLGLFRSTSTLSRAAPPKTAPLPKLSENIKKLMFYC 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1422g00005 909 FunFam Protein argonaute 7 259 385 - -
Vium1422g00005 909 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 44 872 - -
Vium1422g00005 909 CDD Piwi_ago-like 429 869 IPR045246 -
Vium1422g00005 909 SMART DUF1785_2 212 264 IPR014811 -
Vium1422g00005 909 Gene3D paz domain 258 385 - -
Vium1422g00005 909 Gene3D - 446 622 - -
Vium1422g00005 909 ProSiteProfiles Piwi domain profile. 560 870 IPR003165 GO:0003676
Vium1422g00005 909 Pfam Piwi domain 561 867 IPR003165 GO:0003676
Vium1422g00005 909 ProSiteProfiles PAZ domain profile. 272 381 IPR003100 GO:0005515
Vium1422g00005 909 SUPERFAMILY Ribonuclease H-like 545 868 IPR012337 -
Vium1422g00005 909 Pfam PAZ domain 275 397 IPR003100 GO:0005515
Vium1422g00005 909 Pfam Argonaute linker 1 domain 213 262 IPR014811 -
Vium1422g00005 909 Pfam N-terminal domain of argonaute 57 203 IPR032474 -
Vium1422g00005 909 SUPERFAMILY PAZ domain 259 417 IPR036085 GO:0005515
Vium1422g00005 909 CDD PAZ_argonaute_like 275 380 - -
Vium1422g00005 909 FunFam Argonaute 10 446 622 - -
Vium1422g00005 909 SMART PAZ_2_a_3 272 403 IPR003100 GO:0005515
Vium1422g00005 909 SMART Piwi_a_2 560 870 IPR003165 GO:0003676
Vium1422g00005 909 Gene3D - 632 909 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1422g00005 Vium-Chr1422 19042 22946 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1422g00005 51 909 Eukaryotic Initiation Factors Gene Family AT1G48410 41.387 0.0 630
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1422g00005 K11593 - gmx:100797755 1703.72