Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1420g00001 ATGAAGACCATCCACCACCAAAAGCATTCATATCAGGAGGCTGACAGCGTAGAGCGAGATGAAATGCAGAATATGGAGAAGCAGCACTATAACACAAATGGGAAATCTGAGTATGTGAGCCTCAATAAAGCTGTTGAAAGTTGTTTAGGAAAGAATATCTCCAAAATGGAAACTAAATTAAGTATCAAGCAACAGTTAAATGCTTCCAAGAATTGTGATTCGTCAAAAGGTGTTGTTGATGGAACAAAGAGCAACTGCCAATCAGAGATTACCTTTTGTCCAAGTCCTCAGAATAGTTTCTATTCAGAAGCCAAGGAAAGTTTTGGCAACACTGGAGTCAGTGAATGTGTTAGTGTTGATAAGTCAGTTGAAAGTGGAGAAGTTACTAATTCCTGTGAATTTAACGAGAGCAGGAAGACCAGCATCTGTAGAGGAAGCACTGGAAGCGACGTTAGTGATGAGAGCAGCACTAGTAGTCTGAGCAGTGCTTTATACAAGCCCCACAAGGCAAATGACATAAGATGGGAAGCAATTCAAGCCATTCGAGCCCGTGATGGGGTGTTGGAAATGAGACATTTCAGGTTATTGAAGAAATTGGGATGTGGAGACATAGGAAGTGTATATCTAGCTGAACTAAGTGGCACTAGGACTTGTTTTGCAATGAAAGTAATGAACAAAACTGAGTTGGCAAGTCGCAAGAAGCTTGTTAGGTCTCAGACAGAGAGAGAGATACTGCAGTCTCTAGATCATCCATTTCTACCCACATTGTATACACACTTTGAGACAGAGACATTCTCCTGCTTGGTAATGGAGTTTTGCCCTGGAGGGGACTTGCATGCACTCAGGCAAAGACAACCTGGGAAGTATTTTTCTGAGATTGCTGCCAGGTTTTACGTGGCAGAAGTTCTCCTTGCGTTGGAGTACTTGCACATGCTTGGAGTGATCTACAGAGATCTGAAACCTGAGAATGTGTTGGTGAGAGAAGATGGACATATAATGCTTTCAGATTTTGATCTCTCTCTAAGGTGTGCTGTGAGTCCAACACTGGTGAAATCATCAAACTCTACCTTGGAGACAAAAAGCTCTGGATACTGCATGCAGCCTGCGTGCATTGAGCCAACTTGTGTAATTCAGCCAGACTGCATTCAACCATCATGTTTCACACCACGATTTCTCTCGGGAAAATCCAAGAAAGAAAAAAAGTTGAAGCCAAAGAATGATGTGCAGAATCAGGTGACCCCTCTTCCCGAGCTCATTGCCGAGCCCACCAATGCTAGATCAATGTCCTTTGTGGGAACACACGAGTACCTGGCACCTGAAATCATCAAAGGTGAAGGACACGGCAGTGCTGTAGACTGGTGGACATTTGGGATATTCTTGTATGAGCTCATGTTCGGAAGAACGCCGTTCAAAGGTCCGGCGAACCGTGCAACGCTGTTTAATGTTGTTGGACAGCCCTTAAAATTTCCAGAATCTCCCTCTGTGAGCTTTGCTGCCAGGGACTTGATCAGAGGTTTACTTGTGAAAGAACCTCAGAATCGCCTTGCTTACAGACGTGGAGCAACAGAAATAAAACAACATCCATTTTTTCATAATGTTAACTGGGCACTGATCCGATGTGCAAATCCCCCAGAGGTTCCAAGACAAGCCATGAAAGCACTTGCAGCTGAAAAGCTACCTGGAGTGAAGCCTTCTGGTAATTATTTAGATATTGATTTCTTTTGA 1725 0.4348 MKTIHHQKHSYQEADSVERDEMQNMEKQHYNTNGKSEYVSLNKAVESCLGKNISKMETKLSIKQQLNASKNCDSSKGVVDGTKSNCQSEITFCPSPQNSFYSEAKESFGNTGVSECVSVDKSVESGEVTNSCEFNESRKTSICRGSTGSDVSDESSTSSLSSALYKPHKANDIRWEAIQAIRARDGVLEMRHFRLLKKLGCGDIGSVYLAELSGTRTCFAMKVMNKTELASRKKLVRSQTEREILQSLDHPFLPTLYTHFETETFSCLVMEFCPGGDLHALRQRQPGKYFSEIAARFYVAEVLLALEYLHMLGVIYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLVKSSNSTLETKSSGYCMQPACIEPTCVIQPDCIQPSCFTPRFLSGKSKKEKKLKPKNDVQNQVTPLPELIAEPTNARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELMFGRTPFKGPANRATLFNVVGQPLKFPESPSVSFAARDLIRGLLVKEPQNRLAYRRGATEIKQHPFFHNVNWALIRCANPPEVPRQAMKALAAEKLPGVKPSGNYLDIDFF 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1420g00001 574 SUPERFAMILY Protein kinase-like (PK-like) 170 549 IPR011009 -
Vium1420g00001 574 Gene3D Phosphorylase Kinase; domain 1 191 276 - -
Vium1420g00001 574 FunFam serine/threonine-protein kinase D6PK-like 425 548 - -
Vium1420g00001 574 ProSitePatterns Serine/Threonine protein kinases active-site signature. 314 326 IPR008271 GO:0004672|GO:0006468
Vium1420g00001 574 FunFam serine/threonine-protein kinase D6PK-like 277 344 - -
Vium1420g00001 574 FunFam Serine/threonine-protein kinase D6PK-like 191 276 - -
Vium1420g00001 574 PANTHER FLIPPASE KINASE 1-RELATED 24 552 - -
Vium1420g00001 574 ProSiteProfiles Protein kinase domain profile. 193 530 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1420g00001 574 Gene3D Transferase(Phosphotransferase) domain 1 277 345 - -
Vium1420g00001 574 SMART serkin_6 193 530 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1420g00001 574 CDD STKc_phototropin_like 191 550 - -
Vium1420g00001 574 Pfam Protein kinase domain 427 530 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1420g00001 574 Pfam Protein kinase domain 194 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1420g00001 574 Gene3D Transferase(Phosphotransferase) domain 1 424 548 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1420g00001 Vium-Chr1420 7 2742 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1420g00001 97 574 AGC Kinase Gene Family AT5G47750 70.161 0.0 701
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vium1420g00001 Pkinase 4.8e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1420g00001 K08286 - gmx:100802402 1049.27