Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14205g00001 TTTGAGTTCTTGGAATCCGTTCGACAATACCTACTGGGACACGATTCCATCAATCTCATGCCTGCAACCCACCAAGTTGCTTCTCATGATCCACTTTCAAACCCTAAACGTGATGGTGATTTGGAGAACATTGTTTTCCGCAGTGAGGATGCAACTGCTGTGGTGGCGCGTCATGTCCACGCCCCACAGGCGTGGAAGCATTACCGAGGCGTGAGGCGCAGGCCGTGGGGGAAGTTTGCGGCGGAGATAAGGGATCCAAAGAAGAACGGAACTAGGGTTTGGCTTGGAACTTTTGACACTGAGGAGAAAGCAGCTCTGGCTTACGACAAAGCTGCTTTCAAGATGCGTGGGCAAAAAGCTAAGCTGAATTTTCCTCATCTTATAGATTCTGATAATTTTGAAACATTGTCGGAACCTGTGATGGAAACAACTTGTAAGAGGAAGTTGTCGCAAAGTTTTGAACCATCTTCACCGTCATCCTCGTGTTCAGAAGATAGCTCAGAGTCACAAGGGACGAAGAGGAGGAAGAACCTCACTCATCTATTGAATAAGTTAGCCAAGAACAGAAGCCAAGCCAAGCTGGCATGTTGA 591 0.4755 FEFLESVRQYLLGHDSINLMPATHQVASHDPLSNPKRDGDLENIVFRSEDATAVVARHVHAPQAWKHYRGVRRRPWGKFAAEIRDPKKNGTRVWLGTFDTEEKAALAYDKAAFKMRGQKAKLNFPHLIDSDNFETLSEPVMETTCKRKLSQSFEPSSPSSSCSEDSSESQGTKRRKNLTHLLNKLAKNRSQAKLAC 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14205g00001 196 Gene3D AP2/ERF domain 66 126 IPR036955 GO:0003700|GO:0006355
Vium14205g00001 196 MobiDBLite consensus disorder prediction 149 177 - -
Vium14205g00001 196 PANTHER DNA-BINDING DOMAIN 59 173 IPR044808 GO:0003700|GO:0009873
Vium14205g00001 196 SMART rav1_2 67 131 IPR001471 GO:0003700|GO:0006355
Vium14205g00001 196 MobiDBLite consensus disorder prediction 149 167 - -
Vium14205g00001 196 SUPERFAMILY DNA-binding domain 67 126 IPR016177 GO:0003677
Vium14205g00001 196 Pfam AP2 domain 67 117 IPR001471 GO:0003700|GO:0006355
Vium14205g00001 196 FunFam Ethylene-responsive transcription factor 2 66 126 - -
Vium14205g00001 196 ProSiteProfiles AP2/ERF domain profile. 67 125 IPR001471 GO:0003700|GO:0006355
Vium14205g00001 196 PRINTS Ethylene responsive element binding protein signature 68 79 IPR001471 GO:0003700|GO:0006355
Vium14205g00001 196 PRINTS Ethylene responsive element binding protein signature 91 107 IPR001471 GO:0003700|GO:0006355
Vium14205g00001 196 CDD AP2 66 127 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14205g00001 Vium-Chr14205 6190 6842 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14205g00001 53 136 AP2-EREBP Transcription Factor Family AT2G44840 69.412 1.46e-36 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium14205g00001 AP2 2.3e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14205g00001 K09286 - gmx:548037 299.286