Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium141g00032 ATGGATGAACATATTATGTCATCTAATAGATTGGTGGAATGTCGAATATGTCACAGTGAGGATGAAGAATCAACCATGGATGCACCCTGTTCTTGCTGTGGCACATTGAAGTATGCACACCAAAACTGTGTTCAAAGATGGTGCAATGAGAAAGGTGATACTACATGTGAAATTTGCCAACAGCAACTCAAGCCTGGCTATACTGTACCTCCACTGCCTCCTCTATTACACTATGATTCTTTTGGAGGGAACTGGGAGATTTCAAGAAGGGAGCTTCAAAACCATCAGTTCACAGCAATGTTTAGTGCTAATAATGAATTCCTAGACCTAGACTTTGAGTATGCAGCAGCACCCTCTACAAGAAGCTTGATATTTTGCCGCATTGTTACCATTATTTTTATTGGTCTTCTTCTTCTACGCCATACCCTTCCGATCATATTTATACTCAGAGGAGCAAGAGCATATTCGTTCACTGTGTTTATGTCAGTGGTGTTGACAAATATTGGAATGATTATTGTACCATTTTATATAATGGTTAAAGCTATTATTTCAATCCATCAGTTTCAATACCAGGGTCATGAGCAGTCTCCTGTGCAAGGACCCCAGGAAAACGATATAGGACAGCCTCAGTTGCGTGTCATTCGTATAAATGATTCAGTGGTAAACTTCAGAATGGAGTAA 681 0.3979 MDEHIMSSNRLVECRICHSEDEESTMDAPCSCCGTLKYAHQNCVQRWCNEKGDTTCEICQQQLKPGYTVPPLPPLLHYDSFGGNWEISRRELQNHQFTAMFSANNEFLDLDFEYAAAPSTRSLIFCRIVTIIFIGLLLLRHTLPIIFILRGARAYSFTVFMSVVLTNIGMIIVPFYIMVKAIISIHQFQYQGHEQSPVQGPQENDIGQPQLRVIRINDSVVNFRME 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium141g00032 226 Pfam RING-variant domain 14 59 IPR011016 GO:0008270
Vium141g00032 226 CDD RING_CH-C4HC3_MARCH 14 60 - -
Vium141g00032 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 68 IPR013083 -
Vium141g00032 226 SUPERFAMILY RING/U-box 10 63 - -
Vium141g00032 226 ProSiteProfiles Zinc finger RING-CH-type profile. 6 66 IPR011016 GO:0008270
Vium141g00032 226 Pfam Protein of unknown function (DUF3675) 65 182 IPR022143 -
Vium141g00032 226 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 7 189 IPR033275 -
Vium141g00032 226 FunFam Zinc finger family protein 2 69 - -
Vium141g00032 226 SMART ringv_2 13 60 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium141g00032 Vium-Chr141 141653 143234 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium141g00032 13 60 C3H Transcription Factor Family AT2G37950 49.020 1.95e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium141g00032 - - var:108321682 462.996