Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium141g00031 ATGGCCTTACAAAACATTGGTGCTGGTAACAGTGACGATGCCTTCTACAGGTACAAGATGCCAAGAATGATCACCAAAATAGAGGGCAGAGGTAATGGCATCAAAACAAATGTTGTCAATATGGTTGATATCGCAAAAGCCTTGGCAAGGCCAGCTTCCTACACAACAAAGTATTTCGGATGTGAGCTTGGAGCCCAGTCAAAGTTTGATGAGAAAACTGGAACATCCCATGTTAATGGCGCACATGATACTGCAAAACTTGCTGGCCTTCTTGAAATCTTCATCAAGAAATATGTCCAGTGTTATGGTTGTGGAAATCCAGAAACTGATATCTTAATTACCAAGAGCCAAATGATCCAGCTGAAATGTGCTGCTTGTGGGTTTGTGTCTGACGTTGATATGAGAGACAAGCTAACTACTTTCATCATTAAAAACCCTCCAGAAGTTAAGAAAGGATCCAAAGACAAGAAGGCTATGAGGAGAGCTGAGAAAGAGAGACTGAAGGAAGGTGAAATGGCTGATGAGGAGCAGAAAAAACTGAAGAAAGAGGTTATTAAGAAGAAAGGAACTTCCTCTTCTAAGGATGGTGCTCCGAAATCTACCACTTCAAGGAAAAAGGCAAATGGCTCCGATGAAGACCGGGCATCGCCTCCCCGCAGTCAAATTGATGACAAGAATGAGGCTCATGACAAGGAAGATGTGGACGACGACATAGAATGGCAAACCGATACATCACTGGAGGCTGCTCGTCAACGAATCCAGGAACAGCTGAGTGCTGTGACAGCTGATATGGTCATGCTCTCCACAGATGAACCAGAGAAGGAGGAGAAAACCAGAACTAAGGTAAGTGATAATTCTGAGAATGGTAACTTTTTGACGTATAGGACACTGGTTGCAGAAGTGAAAGCAAATTTGAATAAAGGTGTCGAGGCACAAGAGTTGGTGTCCCATCTAGCAGCGCTTCCGGCATCTGCTCAGGAGAAGATGAGTGCTCTGTATGAAGCCCTGTTTGAGGGCATCGAGAAAGGGTTTGCAAAAGAAGCAACTAAGAAGAAGAACTACCTTGCTGCTGCAGTTGCCGAGGAAGAGGGTTTGCAGTTGTTACTGTTGTGTGCAATGGAGGAATTTTCTTGTAAGTCTACTTCCAATGCGTTGAAGGAAGTTGCCCTGGTTCTGAAGGCACTCTACGACGCTGATGTGTTGGAGGAAGAGCACATAGTGCAGTGGTATCAAAAGGGACTGAAAGGGGATAATAAGAACTCTCAGATATGGAAGAATGCTCAGCCGTTCATTGAATGGCTTCAGAATGCAGAATCAGAATCGGATGAAGAATAA 1335 0.4419 MALQNIGAGNSDDAFYRYKMPRMITKIEGRGNGIKTNVVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSHVNGAHDTAKLAGLLEIFIKKYVQCYGCGNPETDILITKSQMIQLKCAACGFVSDVDMRDKLTTFIIKNPPEVKKGSKDKKAMRRAEKERLKEGEMADEEQKKLKKEVIKKKGTSSSKDGAPKSTTSRKKANGSDEDRASPPRSQIDDKNEAHDKEDVDDDIEWQTDTSLEAARQRIQEQLSAVTADMVMLSTDEPEKEEKTRTKVSDNSENGNFLTYRTLVAEVKANLNKGVEAQELVSHLAALPASAQEKMSALYEALFEGIEKGFAKEATKKKNYLAAAVAEEEGLQLLLLCAMEEFSCKSTSNALKEVALVLKALYDADVLEEEHIVQWYQKGLKGDNKNSQIWKNAQPFIEWLQNAESESDEE 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium141g00031 444 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 98 133 IPR016190 GO:0003743|GO:0006413
Vium141g00031 444 MobiDBLite consensus disorder prediction 148 232 - -
Vium141g00031 444 FunFam Eukaryotic translation initiation factor 5 105 145 - -
Vium141g00031 444 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 443 IPR045196 GO:0003743|GO:0006413
Vium141g00031 444 SMART 542_3 352 440 IPR003307 GO:0005515
Vium141g00031 444 FunFam Eukaryotic translation initiation factor 5 290 435 - -
Vium141g00031 444 Gene3D - 3 104 - -
Vium141g00031 444 Pfam Domain found in IF2B/IF5 11 127 IPR002735 GO:0003743|GO:0006413
Vium141g00031 444 Gene3D - 105 145 - -
Vium141g00031 444 SMART eIF2Bneu4 15 129 IPR002735 GO:0003743|GO:0006413
Vium141g00031 444 CDD W2_eIF5 297 442 - -
Vium141g00031 444 SUPERFAMILY ARM repeat 295 438 IPR016024 -
Vium141g00031 444 FunFam Eukaryotic translation initiation factor 5 1 104 - -
Vium141g00031 444 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 10 101 IPR016189 GO:0003743|GO:0006413
Vium141g00031 444 Gene3D - 283 444 - -
Vium141g00031 444 Pfam eIF4-gamma/eIF5/eIF2-epsilon 366 444 IPR003307 GO:0005515
Vium141g00031 444 MobiDBLite consensus disorder prediction 147 237 - -
Vium141g00031 444 ProSiteProfiles W2 domain profile. 284 444 IPR003307 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium141g00031 Vium-Chr141 136905 140081 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium141g00031 1 437 Eukaryotic Initiation Factors Gene Family AT1G36730 62.332 1.95e-177 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium141g00031 K03262 - gmx:100777906 724.161