Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium141g00025 ATGGATTCTGAAACCCTAGACTCCACCCAGCTGTTCCTCACAGCCCTCAAAACCCTTCAACCCGACCCTCCTCCTCCAGCCTCCACCTCCCTCTCCCCATTCCCCTCCTCCCTCCCTCACTCCAAACTTATCCCCCACACACGCTTCCTCGTCGACGCCTTCCGCCACGCCGGCCCCTACTCCCACTCCTACTTCCTCTCCCACTTCCACTCCGACCACTACACCGGCCTCTCCGCCTCCTGGTCCCGCGGCGTCATCTTCTGCTCCGCCACCACCGCCTCTCTCCTCCGCAACATCCTCCACGTCCCCGCTGCCCTCGTCGTCCCTCTTCCCCTCCGCCAAACCCTTTGCATTGATGGCGCCCAAGTCACCCTCCTCGACGCCAACCACTGCCCCGGCGCCGTACAGTTCCTCTTCGCCATCCCCTGCGCCGATGGCACCGCCGCCCTAAGGTACGTTCACACTGGCGACTTCCGTTTTTCTAGTTCCATGGTTTCGGAGCCCGCCCTCGCCTCCTTCGTCGGTGCCGATGCGGTTTTTCTCGACACGACATATTGTAATCCTAAGTTCGTTTTCCCCTCGCAAGAGGAATCTATTGATTACGTTGCCAGTGTTGTGGAGAGGGTTGAGCGTGAGTGTGGTGATAGTAATGATAAAGTTCTATTTCTTGTTGCTACTTATGTTATTGGGAAGGAGAAGATTTTGCTTGAGCTTGCACGTAGATTTAAGAGGAAGATACATGTTGATGCTAGGAAGATGGAGGTTTTGAGGGTTCTTGGGTATGGGGAGAGCGGTGAGTTTACTGAGAATGGGTTGGAGAGTAATATTCATGTTGTTGGGTGGAATGTGTTGGGGGAGACTTGGCCATACTTTAGGCCTAATTTTGTTAAGATGAAGGAGGTTATGGCTGAAAGAGGGGGTTCCTACTCCAGGGTTGTGGGCTTTGTTCCTACCGGCTGGACCTATGAGGTGAAGCGCAGTAGGTTTGCGGTCAAGTGCAAGGATTCATTTCAGATTCATCTTGTGCCCTATAGTGAGCACTCGAACTATGATGAGCTCAGGGAGTATGTGAAGTTTTTGAAGCCAAAGCGGGTTGTTCCGACTGTGGGTTTGGATGTTGAGAAGAGTGACAGTAAACATGCTAACAGAATTATGAAGCACTTTGCCGGGTTAGTTGATGAGACTGCTAACAAGCATGAGTTTTTAAGGGGTTTTTGCCGTGGCCTTGGTGAAGTGGGTTTCAAGGCTGAGAAGGGTGTTAGTGATGTTCTGGAACCAGGTCAAGGCATGGGCAAGGAAGTCATTCCATTGCAGGAGGTAGAAGGTGATAAGAGTATTGATCCAGGTGTGGCTGTGGGTTTGCATTCTTTTATGGGAGATACTTGTACAGAAGATCCTACTTTGCTGACCGATGAAGAAAAAGAGAAAATAATTCGAGAACTTAGTTGTAGTTTACCCACGTGGGTCACCCGAGACCAGATGCTGGATATGATCAGCATCTCTGGGAGTAATGTCGTTGAAGCTGTTTCTAATTTCTATGAACGTGAAACTGAATTTCACGAGCAAGTGATTTCCTGTCAAACTCCTGTTTCAACATCCAAGTGCTGCACATTAAATGACACTGATTCATTTGCAAAACCTAGCCTTAATAATGCAAACAACACTAGCAAAAATATTAACATTTTTCCTAGTCAAGACTCTAAATCAACTATCCTGAGGCATAAAGTACCTAGTCCCGTTTCTCCTGCCAAAAGGAAGAGAAGCAGTGACAGTAAGCCAAACAAAAAAGGCAAAGCCAAAGCAAAATCCGAACCAAGTGATTCAAAGCAGTCCACACTTACAAGATTCTTCAAGAAAGTAATACCTGAGATTCCTGGTGGTACTCAATCTGATAATTCTGAACCAAAGCTTGAACAAAGCTCTGAAGTTGAAGACTTGTTGCCAACTGATGTTGGACAAATTTACAAGGATGAAATCGATCAATTTTTGCAGATAATAAATGGGAATGAGTCATTAAAGAACCATGCCATGACTATAATTAAGAAGACAAAAGGAGATGTCAATAAAGCACTGGATATATATTACTGTAATTCTGGAAATCTTAGCGAAAATGAATTATCAGTTCAAGAGGAGAGCAAAATTGATAGACCATTAGTAAAGAAACATGCATCAGAGGAATTAAGAATTATGCCAGATATTTCTGGGCAGAAAGTGTTAAAAGATAATGTAGATGCTACTCAACTATCTCTACCACCAGAGAAATACAATCCTATAGAACATGCATGTTGGAGAGATGGACAGCCTGCACCATATTTACATATTGCACGAACCTTCAACCTGCTTGAGGGTGAGAGAGGAAAGATTAAAGCTACTTCATTGTTATGCAATATGTTTAGAAGTTTGTTGGCTTTATCTCCGGCAGATGTGCTTCCTGCTGTGTATCTATGCACAAACAAAATTGCTGCAGATCATGAAAATAAGGAATTAAATATTGGTGGAAGTTTAGTCACTGCAGCACTTGAAGAGGCCTGTGGAACAAATCGTTTGAAAATACGGGAGATGTATAACAAATTTGGTGATCTCGGTGATGTTGCTCAAGAATGTCGTCAAACACAGAGATTACTTGCACCACCTACACCACTTCTAATTAAGGATGTTTTCTCTGCGCTACAAAAGATAAGTGTACAAACAGGCAATGGAAGTATATCTCGCAAGAAAGGCATCATTGTTCATCTCATGCACTCCTGCCGAGAGAAGGAGATGAAGTTTCTTGTTCGGACCTTGGTTAGGAACTTAAGGATTGGGGCCATGCTTAGAACTGTTTTGCCTGCATTGGCTCATGCTGTTGCTATGAATTCTAGCCCTACTTTTCACCAAGGAGGAACTGCAGAAAATTTGAAGGAGAAGCTTCAGGTTCTTTCTATGGCAGTTGTTGAAGCATATAACATACTGCCAAATCTGGATCTAATAGTTCCATCTCTCATGAACAAAGGCATTGATTTTTCGGTTTCAAGTTTATCAATGGTTCCAGGAATACCAATTAAGCCTATGCTAGCAAAGATCACCAATGGTATTCCTCAAGCACTGAAGCTATTTGAAAATAAAGCATTTACATGTGAATATAAGTATGATGGTCAGCGGGCCCAAATTCACAAATTAGTTGATGGATCGATTCGTGTTTTTTCTAGAAATGGGGACGAAACAACTTCAAGATTTCCTGATCTGATTGACATAATCAAGGAATCCAGCAAGCCTGTTGCATCAACTTTCGTAATGGATGCGGAAGTTGTTGGTATAGACAGGAAAAATGGATGCAGGATTATGTCTTTCCAGGAGCTATCATCACGTGGGAGAGGTGGAAAAGATGCGTTAGTTACAGCAGAGAGCATCAAGGTGGATATATGCATCTTTGTCTTTGATATAATGTTCGCAAACGGAGAGCAGTTATTGGGTTTTCCTCTACGCCTTAGACGAAAGTATCTGAAGGATTTATTCTATGATGAGAAACCTGGGTATTTTGAATATGCAAAGGAAACAACTATTGAAGCAGATGATGCTTGCTTAGCTTGCGAAGCCACATTAACTAAGATAAATACTTTCCTGGAAGAGGCAATCCACTCTTCATGCGAAGGAATTATGGTGAAAACATTGGATGTTGAGGCTGGCTATTTTCCATCAAAGCGTTCTGATAAATGGTTAAAAGTCAAGCGAGATTATGTGGAAGGATTAAATGATACTCTTGATTTAGTACCGATTGGTGCTTGGCATGGAAATGGAAGGAAAGCTGGATGGTATAGTCCATTTCTTGTGGCGTGTTTCAATCCGGAAACAGAGGAGTACCAAAGTGTATGTCGTGTGATGTCTGGATTCTCAGATTCATTTTATATAGAGATGAAAGAATTCTTCTCTGGGGACAAAGTATTGTCCAAAAAACCGCCATATTATCAAACAGGAGAGGAACCAGACATTTGGTTTTGTCCACAAGTCGTTTGGGAAATAAAAGGAGCAGACTTTACAGTATCCCCAGTTCATCATGCTGCAATTGGTTTAGTTCATCCATCTCGTGGCATTTCAATCAGATTTCCAAGATTTATTTGCTGTGTCTCAGACAGAAACCCAGAAGAATGTAGCACAGCTTCCGATATAGTTGAAATGTTTCATTCTCAGACTCGGAAGATGGATGTCATGGCTAAGTAG 4197 0.4341 MDSETLDSTQLFLTALKTLQPDPPPPASTSLSPFPSSLPHSKLIPHTRFLVDAFRHAGPYSHSYFLSHFHSDHYTGLSASWSRGVIFCSATTASLLRNILHVPAALVVPLPLRQTLCIDGAQVTLLDANHCPGAVQFLFAIPCADGTAALRYVHTGDFRFSSSMVSEPALASFVGADAVFLDTTYCNPKFVFPSQEESIDYVASVVERVERECGDSNDKVLFLVATYVIGKEKILLELARRFKRKIHVDARKMEVLRVLGYGESGEFTENGLESNIHVVGWNVLGETWPYFRPNFVKMKEVMAERGGSYSRVVGFVPTGWTYEVKRSRFAVKCKDSFQIHLVPYSEHSNYDELREYVKFLKPKRVVPTVGLDVEKSDSKHANRIMKHFAGLVDETANKHEFLRGFCRGLGEVGFKAEKGVSDVLEPGQGMGKEVIPLQEVEGDKSIDPGVAVGLHSFMGDTCTEDPTLLTDEEKEKIIRELSCSLPTWVTRDQMLDMISISGSNVVEAVSNFYERETEFHEQVISCQTPVSTSKCCTLNDTDSFAKPSLNNANNTSKNINIFPSQDSKSTILRHKVPSPVSPAKRKRSSDSKPNKKGKAKAKSEPSDSKQSTLTRFFKKVIPEIPGGTQSDNSEPKLEQSSEVEDLLPTDVGQIYKDEIDQFLQIINGNESLKNHAMTIIKKTKGDVNKALDIYYCNSGNLSENELSVQEESKIDRPLVKKHASEELRIMPDISGQKVLKDNVDATQLSLPPEKYNPIEHACWRDGQPAPYLHIARTFNLLEGERGKIKATSLLCNMFRSLLALSPADVLPAVYLCTNKIAADHENKELNIGGSLVTAALEEACGTNRLKIREMYNKFGDLGDVAQECRQTQRLLAPPTPLLIKDVFSALQKISVQTGNGSISRKKGIIVHLMHSCREKEMKFLVRTLVRNLRIGAMLRTVLPALAHAVAMNSSPTFHQGGTAENLKEKLQVLSMAVVEAYNILPNLDLIVPSLMNKGIDFSVSSLSMVPGIPIKPMLAKITNGIPQALKLFENKAFTCEYKYDGQRAQIHKLVDGSIRVFSRNGDETTSRFPDLIDIIKESSKPVASTFVMDAEVVGIDRKNGCRIMSFQELSSRGRGGKDALVTAESIKVDICIFVFDIMFANGEQLLGFPLRLRRKYLKDLFYDEKPGYFEYAKETTIEADDACLACEATLTKINTFLEEAIHSSCEGIMVKTLDVEAGYFPSKRSDKWLKVKRDYVEGLNDTLDLVPIGAWHGNGRKAGWYSPFLVACFNPETEEYQSVCRVMSGFSDSFYIEMKEFFSGDKVLSKKPPYYQTGEEPDIWFCPQVVWEIKGADFTVSPVHHAAIGLVHPSRGISIRFPRFICCVSDRNPEECSTASDIVEMFHSQTRKMDVMAK 1398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium141g00025 1398 Gene3D - 44 369 IPR036866 -
Vium141g00025 1398 CDD SNM1A-1C-like_MBL-fold 28 188 - -
Vium141g00025 1398 FunFam DNA ligase 6 44 209 - -
Vium141g00025 1398 FunFam DNA ligase 191 347 - -
Vium141g00025 1398 Gene3D DNA ligase/mRNA capping enzyme 1045 1176 - -
Vium141g00025 1398 MobiDBLite consensus disorder prediction 548 574 - -
Vium141g00025 1398 Pfam DNA ligase N terminus 770 946 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vium141g00025 1398 Gene3D - 191 347 - -
Vium141g00025 1398 Pfam ATP dependent DNA ligase domain 1016 1236 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Vium141g00025 1398 CDD OBF_DNA_ligase_I 1245 1388 - -
Vium141g00025 1398 FunFam DNA ligase 1045 1176 - -
Vium141g00025 1398 MobiDBLite consensus disorder prediction 548 645 - -
Vium141g00025 1398 NCBIfam ATP-dependent DNA ligase 828 1386 IPR000977 GO:0003910|GO:0005524|GO:0071897
Vium141g00025 1398 SUPERFAMILY Nucleic acid-binding proteins 1245 1389 IPR012340 -
Vium141g00025 1398 CDD Adenylation_DNA_ligase_I_Euk 1007 1239 - -
Vium141g00025 1398 FunFam DNA ligase 747 1018 - -
Vium141g00025 1398 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 972 1238 - -
Vium141g00025 1398 Gene3D - 1027 1240 - -
Vium141g00025 1398 Pfam ATP dependent DNA ligase C terminal region 1262 1367 IPR012309 GO:0003910|GO:0006281|GO:0006310
Vium141g00025 1398 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 278 1391 - -
Vium141g00025 1398 Pfam DNA repair metallo-beta-lactamase 265 370 IPR011084 -
Vium141g00025 1398 FunFam DNA ligase 1241 1398 - -
Vium141g00025 1398 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 750 999 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vium141g00025 1398 Gene3D - 1241 1397 IPR012340 -
Vium141g00025 1398 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 1040 1048 IPR016059 GO:0003909
Vium141g00025 1398 SUPERFAMILY Metallo-hydrolase/oxidoreductase 47 370 IPR036866 -
Vium141g00025 1398 Gene3D - 747 1018 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vium141g00025 1398 ProSiteProfiles ATP-dependent DNA ligase family profile. 1127 1274 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium141g00025 Vium-Chr141 95310 108448 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium141g00025 748 1389 Core DNA Replication Machinery Family AT1G08130 38.509 2.70e-162 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium141g00025 - - gmx:100807673 2407.87