Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium141g00024 ATGGATTCTGAAACCCTAGACTCCACCCAGCTGTTCCTCACAGCCCTCAAAACCCTTCAACCCGACCCTCCTCCTCCAGCCTCCACCTCCCTCTCCCCATTCCCCTCCTCCCTCCCTCACTCCAAACTTATCCCCCACACACGCTTCCTCGTCGACGCCTTCCGCCACGCCGGCCCCTACTCCCACTCCTACTTCCTCTCCCACTTCCACTCCGACCACTACACCGGCCTCTCCGCCTCCTGGTCCCGCGGCGTCATCTTCTGCTCCGCCACCACCGCCTCTCTCCTCCGCAACATCCTCCACGTCCCCGCTGCCCTCGTCGTCCCTCTTCCCCTCCGCCAAACCCTTTGCATTGATGGCGCCCAAGTCACCCTCCTCGACGCCAACCACTGCCCCGGCGCCGTACAGTTCCTCTTCGCCATCCCCTGCGCCGATGGCACCGCCGCCCTAAGGTACGTTCACACTGGCGACTTCCGTTTTTCTAGTTCCATGGTTTCGGAGCCCGCCCTCGCCTCCTTCGTCGGTGCCGATGCGGTTTTTCTCGACACGACATATTGTAATCCTAAGTTCGTTTTCCCCTCGCAAGAGGAATCTATTGATTACGTTGCCAGTGTTGTGGAGAGGGTTGAGCGTGAGTGTGGTGATAGTAATGATAAAGTTCTATTTCTTGTTGCTACTTATGTTATTGGGAAGGAGAAGATTTTGCTTGAGCTTGCACGTAGATTTAAGAGGAAGATACATGTTGATGCTAGGAAGATGGAGGTTTTGAGGGTTCTTGGGTATGGGGAGAGCGGTGAGTTTACTGAGAATGGGTTGGAGAGTAATATTCATGTTGTTGGGTGGAATGTGTTGGGGGAGACTTGGCCATACTTTAGGCCTAATTTTGTTAAGATGAAGGAGGTTATGGCTGAAAGAGGGGGTTCCTACTCCAGGGTTGTGGGCTTTGTTCCTACCGGCTGGACCTATGAGGTGAAGCGCAGTAGGTTTGCGGTCAAGTGCAAGGATTCATTTCAGATTCATCTTGTGCCCTATAGTGAGCACTCGAACTATGATGAGCTCAGGGAGTATGTGAAGTTTTTGAAGCCAAAGCGGGTTGTTCCGACTGTGGGTTTGGATGTTGAGAAGAGTGACAGTAAACATGCTAACAGAATTATGAAGCACTTTGCCGGGTTAGTTGATGAGACTGCTAACAAGCATGAGTTTTTAAGGGGTTTTTGCCGTGGCCTTGGTGAAGTGGGTTTCAAGGCTGAGAAGGGTGTTAGTGATGTTCTGGAACCAGGTCAAGGCATGGGCAAGGAAGTCATTCCATTGCAGGAGGTAGAAGGTGATAAGAGTATTGATCCAGGTGTGGCTGTGGGTTTGCATTCTTTTATGGGAGATACTTGTACAGAAGATCCTACTTTGCTGACCGATGAAGAAAAAGAGAAAATAATTCGAGAACTTAGTTGTAGTTTACCCACGTGGGTCACCCGAGACCAGATGCTGGATATGATCAGCATCTCTGGGAGTAATGTCGTTGAAGCTGTTTCTAATTTCTATGAACGTGAAACTGAATTTCACGAGCAAGTGATTTCCTGTCAAACTCCTGTTTCAACATCCAAGTGCTGCACATTAAATGACACTGATTCATTTGCAAAACCTAGCCTTAATAATGCAAACAACACTAGCAAAAATATTAACATTTTTCCTAGTCAAGACTCTAAATCAACTATCCTGAGGCATAAAGTACCTAGTCCCGTTTCTCCTGCCAAAAGGAAGAGAAGCAGTGACAGTAAGCCAAACAAAAAAGGCAAAGCCAAAGCAAAATCCGAACCAAGTGATTCAAAGCAGTCCACACTTACAAGATTCTTCAAGAAAGTAATACCTGAGATTCCTGGTGGTACTCAATCTGATAATTCTGAACCAAAGCTTGAACAAAGCTCTGAAGTTGAAGACTTGTTGCCAACTGATGTTGGACAAATTTACAAGGATGAAATCGATCAATTTTTGCAGATAATAAATGGGAATGAGTCATTAAAGAACCATGCCATGACTATAATTAAGAAGACAAAAGGAGATGTCAATAAAGCACTGGATATATATTACTGTAATTCTGGAAATCTTAGCGAAAATGAATTATCAGTTCAAGAGGAGAGCAAAATTGATAGACCATTAGTAAAGAAACATGCATCAGAGGAATTAAGAATTATGCCAGATATTTCTGGGCAGAAAGTGTTAAAAGATAATGTAGATGCTACTCAACTATCTCTACCACCAGAGAAATACAATCCTATAGAACATGCATGTTGGAGAGATGGACAGCCTGCACCATATTTACATATTGCACGAACCTTCAACCTGCTTGAGGGTGAGAGAGGAAAGATTAAAGCTACTTCATTGTTATGCAATATGTTTAGAAGTTTGTTGGCTTTATCTCCGGCAGATGTGCTTCCTGCTGTGTATCTATGCACAAACAAAATTGCTGCAGATCATGAAAATAAGGAATTAAATATTGGTGGAAGTTTAGTCACTGCAGCACTTGAAGAGGCCTGTGGAACAAATCGTTTGAAAATACGGGAGATGTATAACAAATTTGGTGATGTTGCTCAAGAATGTCGTCAAACACAGAGATTACTTGCACCACCTACACCACTTCTAATTAAGGATGTTTTCTCTGCGCTACAAAAGATAAGTGTACAAACAGGCAATGGAAGTATATCTCGCAAGAAAGGCATCATTGTTCATCTCATGCACTCCTGCCGAGAGAAGGAGATGAAGTTTCTTGTTCGGACCTTGGTTAGGAACTTAAGGATTGGGGCCATGCTTAGAACTGTTTTGCCTGCATTGGCTCATGCTGTTGCTATGAATTCTAGCCCTACTTTTCACCAAGGAGGAACTGCAGAAAATTTGAAGGAGAAGCTTCAGGTTCTTTCTATGGCAGTTGTTGAAGCATATAACATACTGCCAAATCTGGATCTAATAGTTCCATCTCTCATGAACAAAGGCATTGATTTTTCGGTTTCAAGTTTATCAATGGTTCCAGGAATACCAATTAAGCCTATGCTAGCAAAGATCACCAATGGTATTCCTCAAGCACTGAAGCTATTTGAAAATAAAGCATTTACATGTGAATATAAGTATGATGGTCAGCGGGCCCAAATTCACAAATTAGTTGATGGATCGATTCGTGTTTTTTCTAGAAATGGGGACGAAACAACTTCAAGATTTCCTGATCTGATTGACATAATCAAGGAATCCAGCAAGCCTGTTGCATCAACTTTCGTAATGGATGCGGAAGTTGTTGGTATAGACAGGAAAAATGGATGCAGGATTATGTCTTTCCAGGAGCTATCATCACGTGGGAGAGGTGGAAAAGATGCGTTAGTTACAGCAGAGAGCATCAAGGTGGATATATGCATCTTTGTCTTTGATATAATGTTCGCAAACGGAGAGCAGTTATTGGGTTTTCCTCTACGCCTTAGACGAAAGTATCTGAAGGATTTATTCTATGATGAGAAACCTGGGTATTTTGAATATGCAAAGGAAACAACTATTGAAGCAGATGATGCTTGCTTAGCTTGCGAAGCCACATTAACTAAGATAAATACTTTCCTGGAAGAGGCAATCCACTCTTCATGCGAAGGAATTATGGTGAAAACATTGGATGTTGAGGCTGGCTATTTTCCATCAAAGCGTTCTGATAAATGGTTAAAAGTCAAGCGAGATTATGTGGAAGGATTAAATGATACTCTTGATTTAGTACCGATTGGTGCTTGGCATGGAAATGGAAGGAAAGCTGGATGGTATAGTCCATTTCTTGTGGCGTGTTTCAATCCGGAAACAGAGGAGTACCAAAGTGTATGTCGTGTGATGTCTGGATTCTCAGATTCATTTTATATAGAGATGAAAGAATTCTTCTCTGGGGACAAAGTATTGTCCAAAAAACCGCCATATTATCAAACAGGAGAGGAACCAGACATTTGGTTTTGTCCACAAGTCGTTTGGGAAATAAAAGGAGCAGACTTTACAGTATCCCCAGTTCATCATGCTGCAATTGGTTTAGTTCATCCATCTCGTGGCATTTCAATCAGATTTCCAAGATTTATTTGCTGTGTCTCAGACAGAAACCCAGAAGAATGTAGCACAGCTTCCGATATAGTTGAAATGTTTCATTCTCAGACTCGGAAGATGGATGTCATGGCTAAGTAG 4188 0.4339 MDSETLDSTQLFLTALKTLQPDPPPPASTSLSPFPSSLPHSKLIPHTRFLVDAFRHAGPYSHSYFLSHFHSDHYTGLSASWSRGVIFCSATTASLLRNILHVPAALVVPLPLRQTLCIDGAQVTLLDANHCPGAVQFLFAIPCADGTAALRYVHTGDFRFSSSMVSEPALASFVGADAVFLDTTYCNPKFVFPSQEESIDYVASVVERVERECGDSNDKVLFLVATYVIGKEKILLELARRFKRKIHVDARKMEVLRVLGYGESGEFTENGLESNIHVVGWNVLGETWPYFRPNFVKMKEVMAERGGSYSRVVGFVPTGWTYEVKRSRFAVKCKDSFQIHLVPYSEHSNYDELREYVKFLKPKRVVPTVGLDVEKSDSKHANRIMKHFAGLVDETANKHEFLRGFCRGLGEVGFKAEKGVSDVLEPGQGMGKEVIPLQEVEGDKSIDPGVAVGLHSFMGDTCTEDPTLLTDEEKEKIIRELSCSLPTWVTRDQMLDMISISGSNVVEAVSNFYERETEFHEQVISCQTPVSTSKCCTLNDTDSFAKPSLNNANNTSKNINIFPSQDSKSTILRHKVPSPVSPAKRKRSSDSKPNKKGKAKAKSEPSDSKQSTLTRFFKKVIPEIPGGTQSDNSEPKLEQSSEVEDLLPTDVGQIYKDEIDQFLQIINGNESLKNHAMTIIKKTKGDVNKALDIYYCNSGNLSENELSVQEESKIDRPLVKKHASEELRIMPDISGQKVLKDNVDATQLSLPPEKYNPIEHACWRDGQPAPYLHIARTFNLLEGERGKIKATSLLCNMFRSLLALSPADVLPAVYLCTNKIAADHENKELNIGGSLVTAALEEACGTNRLKIREMYNKFGDVAQECRQTQRLLAPPTPLLIKDVFSALQKISVQTGNGSISRKKGIIVHLMHSCREKEMKFLVRTLVRNLRIGAMLRTVLPALAHAVAMNSSPTFHQGGTAENLKEKLQVLSMAVVEAYNILPNLDLIVPSLMNKGIDFSVSSLSMVPGIPIKPMLAKITNGIPQALKLFENKAFTCEYKYDGQRAQIHKLVDGSIRVFSRNGDETTSRFPDLIDIIKESSKPVASTFVMDAEVVGIDRKNGCRIMSFQELSSRGRGGKDALVTAESIKVDICIFVFDIMFANGEQLLGFPLRLRRKYLKDLFYDEKPGYFEYAKETTIEADDACLACEATLTKINTFLEEAIHSSCEGIMVKTLDVEAGYFPSKRSDKWLKVKRDYVEGLNDTLDLVPIGAWHGNGRKAGWYSPFLVACFNPETEEYQSVCRVMSGFSDSFYIEMKEFFSGDKVLSKKPPYYQTGEEPDIWFCPQVVWEIKGADFTVSPVHHAAIGLVHPSRGISIRFPRFICCVSDRNPEECSTASDIVEMFHSQTRKMDVMAK 1395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium141g00024 1395 Gene3D - 44 369 IPR036866 -
Vium141g00024 1395 NCBIfam ATP-dependent DNA ligase 828 1383 IPR000977 GO:0003910|GO:0005524|GO:0071897
Vium141g00024 1395 CDD SNM1A-1C-like_MBL-fold 28 188 - -
Vium141g00024 1395 FunFam DNA ligase 6 44 209 - -
Vium141g00024 1395 FunFam DNA ligase 191 347 - -
Vium141g00024 1395 MobiDBLite consensus disorder prediction 548 574 - -
Vium141g00024 1395 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 969 1235 - -
Vium141g00024 1395 CDD OBF_DNA_ligase_I 1242 1385 - -
Vium141g00024 1395 ProSiteProfiles ATP-dependent DNA ligase family profile. 1124 1271 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Vium141g00024 1395 Gene3D - 191 347 - -
Vium141g00024 1395 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 1037 1045 IPR016059 GO:0003909
Vium141g00024 1395 Gene3D - 1024 1237 - -
Vium141g00024 1395 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 278 1388 - -
Vium141g00024 1395 MobiDBLite consensus disorder prediction 548 645 - -
Vium141g00024 1395 SUPERFAMILY Nucleic acid-binding proteins 1242 1386 IPR012340 -
Vium141g00024 1395 Gene3D - 1238 1394 IPR012340 -
Vium141g00024 1395 FunFam DNA ligase 1042 1173 - -
Vium141g00024 1395 Pfam DNA repair metallo-beta-lactamase 265 370 IPR011084 -
Vium141g00024 1395 CDD Adenylation_DNA_ligase_I_Euk 1004 1236 - -
Vium141g00024 1395 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 750 996 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vium141g00024 1395 Gene3D DNA ligase/mRNA capping enzyme 1042 1173 - -
Vium141g00024 1395 Pfam DNA ligase N terminus 770 943 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vium141g00024 1395 Pfam ATP dependent DNA ligase domain 1013 1233 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Vium141g00024 1395 Gene3D - 747 1015 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vium141g00024 1395 Pfam ATP dependent DNA ligase C terminal region 1259 1364 IPR012309 GO:0003910|GO:0006281|GO:0006310
Vium141g00024 1395 FunFam DNA ligase 1238 1395 - -
Vium141g00024 1395 SUPERFAMILY Metallo-hydrolase/oxidoreductase 47 370 IPR036866 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium141g00024 Vium-Chr141 95307 108448 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium141g00024 748 1386 Core DNA Replication Machinery Family AT1G08130 38.199 2.73e-159 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium141g00024 - - gmx:100807673 2396.31