Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium141g00023 ATGGATTCTGAAACCCTAGACTCCACCCAGCTGTTCCTCACAGCCCTCAAAACCCTTCAACCCGACCCTCCTCCTCCAGCCTCCACCTCCCTCTCCCCATTCCCCTCCTCCCTCCCTCACTCCAAACTTATCCCCCACACACGCTTCCTCGTCGACGCCTTCCGCCACGCCGGCCCCTACTCCCACTCCTACTTCCTCTCCCACTTCCACTCCGACCACTACACCGGCCTCTCCGCCTCCTGGTCCCGCGGCGTCATCTTCTGCTCCGCCACCACCGCCTCTCTCCTCCGCAACATCCTCCACGTCCCCGCTGCCCTCGTCGTCCCTCTTCCCCTCCGCCAAACCCTTTGCATTGATGGCGCCCAAGTCACCCTCCTCGACGCCAACCACTGCCCCGGCGCCGTACAGTTCCTCTTCGCCATCCCCTGCGCCGATGGCACCGCCGCCCTAAGGTACGTTCACACTGGCGACTTCCGTTTTTCTAGTTCCATGGTTTCGGAGCCCGCCCTCGCCTCCTTCGTCGGTGCCGATGCGGTTTTTCTCGACACGACATATTGTAATCCTAAGTTCGTTTTCCCCTCGCAAGAGGAATCTATTGATTACGTTGCCAGTGTTGTGGAGAGGGTTGAGCGTGAGTGTGGTGATAGTAATGATAAAGTTCTATTTCTTGTTGCTACTTATGTTATTGGGAAGGAGAAGATTTTGCTTGAGCTTGCACGTAGATTTAAGAGGAAGATACATGTTGATGCTAGGAAGATGGAGGTTTTGAGGGTTCTTGGGTATGGGGAGAGCGGTGAGTTTACTGAGAATGGGTTGGAGAGTAATATTCATGTTGTTGGGTGGAATGTGTTGGGGGAGACTTGGCCATACTTTAGGCCTAATTTTGTTAAGATGAAGGAGGTTATGGCTGAAAGAGGGGGTTCCTACTCCAGGGTTGTGGGCTTTGTTCCTACCGGCTGGACCTATGAGGTGAAGCGCAGTAGGTTTGCGGTCAAGTGCAAGGATTCATTTCAGATTCATCTTGTGCCCTATAGTGAGCACTCGAACTATGATGAGCTCAGGGAGTATGTGAAGTTTTTGAAGCCAAAGCGGGTTGTTCCGACTGTGGGTTTGGATGTTGAGAAGAGTGACAGTAAACATGCTAACAGAATTATGAAGCACTTTGCCGGGTTAGTTGATGAGACTGCTAACAAGCATGAGTTTTTAAGGGGTTTTTGCCGTGGCCTTGGTGAAGTGGGTTTCAAGGCTGAGAAGGGTGTTAGTGATGTTCTGGAACCAGGTCAAGGCATGGGCAAGGAAGTCATTCCATTGCAGGAGGTAGAAGGTGATAAGAGTATTGATCCAGGTGTGGCTGTGGGTTTGCATTCTTTTATGGGAGATACTTGTACAGAAGATCCTACTTTGCTGACCGATGAAGAAAAAGAGAAAATAATTCGAGAACTTAGTTGTAGTTTACCCACGTGGGTCACCCGAGACCAGATGCTGGATATGATCAGCATCTCTGGGAGTAATGTCGTTGAAGCTGTTTCTAATTTCTATGAACGTGAAACTGAATTTCACGAGCAAGTGATTTCCTGTCAAACTCCTGTTTCAACATCCAAGTGCTGCACATTAAATGACACTGATTCATTTGCAAAACCTAGCCTTAATAATGCAAACAACACTAGCAAAAATATTAACATTTTTCCTAGTCAAGACTCTAAATCAACTATCCTGAGGCATAAAGTACCTAGTCCCGTTTCTCCTGCCAAAAGGAAGAGAAGCAGTGACAGTAAGCCAAACAAAAAAGGCAAAGCCAAAGCAAAATCCGAACCAAGTGATTCAAAGCAGTCCACACTTACAAGATTCTTCAAGAAAGTAATACCTGAGATTCCTGGTGGTACTCAATCTGATAATTCTGAACCAAAGCTTGAACAAAGCTCTGAAGTTGAAGACTTGTTGCCAACTGATGTTGGACAAATTTACAAGGATGAAATCGATCAATTTTTGCAGATAATAAATGGGAATGAGTCATTAAAGAACCATGCCATGACTATAATTAAGAAGACAAAAGGAGATGTCAATAAAGCACTGGATATATATTACTGTAATTCTGGAAATCTTAGCGAAAATGAATTATCAGTTCAAGAGGAGAGCAAAATTGATAGACCATTAGTAAAGAAACATGCATCAGAGGAATTAAGAATTATGCCAGATATTTCTGGGCAGAAAGTGTTAAAAGATAATGTAGATGCTACTCAACTATCTCTACCACCAGAGAAATACAATCCTATAGAACATGCATGTTGGAGAGATGGACAGCCTGCACCATATTTACATATTGCACGAACCTTCAACCTGCTTGAGGGTGAGAGAGGAAAGATTAAAGCTACTTCATTGTTATGCAATATGTTTAGAAGTTTGTTGGCTTTATCTCCGGCAGATGTGCTTCCTGCTGTGTATCTATGCACAAACAAAATTGCTGCAGATCATGAAAATAAGGAATTAAATATTGGTGGAAGTTTAGTCACTGCAGCACTTGAAGAGGCCTGTGGAACAAATCGTTTGAAAATACGGGAGATGTATAACAAATTTGGTGATCTCGGTGATGTTGCTCAAGAATGTCGTCAAACACAGAGATTACTTGCACCACCTACACCACTTCTAATTAAGGATGTTTTCTCTGCGCTACAAAAGATAAGTGTACAAACAGGCAATGGAAGTATATCTCGCAAGAAAGGCATCATTGTTCATCTCATGCACTCCTGCCGAGAGAAGGAGATGAAGTTTCTTGTTCGGACCTTGGTTAGGAACTTAAGGATTGGGGCCATGCTTAGAACTGTTTTGCCTGCATTGGCTCATGCTGTTGCTATGAATTCTAGCCCTACTTTTCACCAAGGAGGAACTGCAGAAAATTTGAAGGAGAAGCTTCAGGTTCTTTCTATGGCAGTTGTTGAAGCATATAACATACTGCCAAATCTGGATCTAATAGTTCCATCTCTCATGAACAAAGGCATTGATTTTTCGGTTTCAAGTTTATCAATGGTTCCAGGAATACCAATTAAGCCTATGCTAGCAAAGATCACCAATGGTATTCCTCAAGCACTGAAGCTATTTGAAAATAAAGCATTTACATGTGAATATAAGTATGATGGTCAGCGGGCCCAAATTCACAAATTAGTTGATGGATCGATTCGTGTTTTTTCTAGAAATGGGGACGAAACAACTTCAAGATTTCCTGATCTGATTGACATAATCAAGGAATCCAGCAAGCCTGTTGCATCAACTTTCGTAATGGATGCGGAAGTTGTTGGTATAGACAGGAAAAATGGATGCAGGATTATGTCTTTCCAGGAGCTATCATCACGTGGGAGAGGTGGAAAAGATGCGTTAGTTACAGCAGAGAGCATCAAGGTGGATATATGCATCTTTGTCTTTGATATAATGTTCGCAAACGGAGAGCAGTTATTGGGTTTTCCTCTACGCCTTAGACGAAAGTATCTGAAGGATTTATTCTATGATGAGAAACCTGGGTATTTTGAATATGCAAAGGAAACAACTATGATGCTTGCTTAG 3555 0.4402 MDSETLDSTQLFLTALKTLQPDPPPPASTSLSPFPSSLPHSKLIPHTRFLVDAFRHAGPYSHSYFLSHFHSDHYTGLSASWSRGVIFCSATTASLLRNILHVPAALVVPLPLRQTLCIDGAQVTLLDANHCPGAVQFLFAIPCADGTAALRYVHTGDFRFSSSMVSEPALASFVGADAVFLDTTYCNPKFVFPSQEESIDYVASVVERVERECGDSNDKVLFLVATYVIGKEKILLELARRFKRKIHVDARKMEVLRVLGYGESGEFTENGLESNIHVVGWNVLGETWPYFRPNFVKMKEVMAERGGSYSRVVGFVPTGWTYEVKRSRFAVKCKDSFQIHLVPYSEHSNYDELREYVKFLKPKRVVPTVGLDVEKSDSKHANRIMKHFAGLVDETANKHEFLRGFCRGLGEVGFKAEKGVSDVLEPGQGMGKEVIPLQEVEGDKSIDPGVAVGLHSFMGDTCTEDPTLLTDEEKEKIIRELSCSLPTWVTRDQMLDMISISGSNVVEAVSNFYERETEFHEQVISCQTPVSTSKCCTLNDTDSFAKPSLNNANNTSKNINIFPSQDSKSTILRHKVPSPVSPAKRKRSSDSKPNKKGKAKAKSEPSDSKQSTLTRFFKKVIPEIPGGTQSDNSEPKLEQSSEVEDLLPTDVGQIYKDEIDQFLQIINGNESLKNHAMTIIKKTKGDVNKALDIYYCNSGNLSENELSVQEESKIDRPLVKKHASEELRIMPDISGQKVLKDNVDATQLSLPPEKYNPIEHACWRDGQPAPYLHIARTFNLLEGERGKIKATSLLCNMFRSLLALSPADVLPAVYLCTNKIAADHENKELNIGGSLVTAALEEACGTNRLKIREMYNKFGDLGDVAQECRQTQRLLAPPTPLLIKDVFSALQKISVQTGNGSISRKKGIIVHLMHSCREKEMKFLVRTLVRNLRIGAMLRTVLPALAHAVAMNSSPTFHQGGTAENLKEKLQVLSMAVVEAYNILPNLDLIVPSLMNKGIDFSVSSLSMVPGIPIKPMLAKITNGIPQALKLFENKAFTCEYKYDGQRAQIHKLVDGSIRVFSRNGDETTSRFPDLIDIIKESSKPVASTFVMDAEVVGIDRKNGCRIMSFQELSSRGRGGKDALVTAESIKVDICIFVFDIMFANGEQLLGFPLRLRRKYLKDLFYDEKPGYFEYAKETTMMLA 1184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium141g00023 1184 CDD SNM1A-1C-like_MBL-fold 28 188 - -
Vium141g00023 1184 Gene3D - 747 1015 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vium141g00023 1184 Pfam DNA ligase N terminus 770 946 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vium141g00023 1184 MobiDBLite consensus disorder prediction 548 574 - -
Vium141g00023 1184 FunFam DNA ligase 747 1018 - -
Vium141g00023 1184 Gene3D - 191 347 - -
Vium141g00023 1184 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 972 1170 - -
Vium141g00023 1184 CDD Adenylation_DNA_ligase_I_Euk 1007 1181 - -
Vium141g00023 1184 NCBIfam ATP-dependent DNA ligase 828 1180 IPR000977 GO:0003910|GO:0005524|GO:0071897
Vium141g00023 1184 FunFam DNA ligase 191 347 - -
Vium141g00023 1184 Gene3D DNA ligase/mRNA capping enzyme 1016 1182 - -
Vium141g00023 1184 ProSiteProfiles ATP-dependent DNA ligase family profile. 1127 1184 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Vium141g00023 1184 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 278 1181 - -
Vium141g00023 1184 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 1040 1048 IPR016059 GO:0003909
Vium141g00023 1184 MobiDBLite consensus disorder prediction 548 645 - -
Vium141g00023 1184 Pfam DNA repair metallo-beta-lactamase 265 370 IPR011084 -
Vium141g00023 1184 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 750 999 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vium141g00023 1184 FunFam DNA ligase 6 44 209 - -
Vium141g00023 1184 SUPERFAMILY Metallo-hydrolase/oxidoreductase 47 370 IPR036866 -
Vium141g00023 1184 FunFam DNA ligase 1045 1176 - -
Vium141g00023 1184 Pfam ATP dependent DNA ligase domain 1016 1178 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Vium141g00023 1184 Gene3D - 44 369 IPR036866 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium141g00023 Vium-Chr141 95303 105749 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium141g00023 752 1180 Core DNA Replication Machinery Family AT1G08130 37.296 1.77e-91 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium141g00023 - - gmx:100807673 1990.7